Wall clock time and date at job start Sun Mar 29 2020 21:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00564 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00433 * 3 2 1 5 5 H 1.48499 * 109.46966 * 30.00171 * 3 2 1 6 6 H 1.48500 * 109.47320 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00130 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00149 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.47211 * 300.00108 * 9 7 2 11 11 O 1.42906 * 109.47102 * 59.99956 * 9 7 2 12 12 C 1.52997 * 109.47265 * 180.02562 * 9 7 2 13 13 S 1.81402 * 109.47043 * 180.02562 * 12 9 7 14 14 C 1.76202 * 103.00103 * 179.97438 * 13 12 9 15 15 C 1.34174 * 125.24315 * 180.02562 * 14 13 12 16 16 C 1.38545 * 114.70752 * 179.73639 * 15 14 13 17 17 C 1.33235 * 114.99802 * 359.97438 * 16 15 14 18 18 S 1.75862 * 109.75047 * 0.02562 * 17 16 15 19 19 H 0.97006 * 119.99377 * 359.97438 * 1 2 3 20 20 H 0.96691 * 113.99952 * 60.00151 * 11 9 7 21 21 H 1.08994 * 109.47254 * 59.99809 * 12 9 7 22 22 H 1.09000 * 109.47002 * 299.99397 * 12 9 7 23 23 H 1.08003 * 122.64342 * 359.71055 * 15 14 13 24 24 H 1.08000 * 122.50414 * 180.02562 * 16 15 14 25 25 H 1.08003 * 125.12649 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6245 -2.5571 0.8897 11 8 0.4288 -2.5746 -1.1670 12 6 2.2451 -3.6622 -0.0005 13 16 1.3379 -5.2331 -0.0013 14 6 2.6265 -6.4349 -0.0020 15 6 2.4453 -7.7644 -0.0031 16 6 3.6141 -8.5081 -0.0093 17 6 4.7374 -7.7916 -0.0136 18 16 4.3483 -6.0766 -0.0092 19 1 -0.4849 0.8401 0.0004 20 1 0.9206 -2.5291 -1.9983 21 1 2.8717 -3.6045 0.8894 22 1 2.8716 -3.6045 -0.8906 23 1 1.4655 -8.2188 0.0008 24 1 3.6148 -9.5881 -0.0112 25 1 5.7364 -8.2021 -0.0182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219753748.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:45 Heat of formation + Delta-G solvation = -43.555576 kcal Electronic energy + Delta-G solvation = -11377.295338 eV Core-core repulsion = 9186.813738 eV Total energy + Delta-G solvation = -2190.481600 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 230.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.47483 -37.93830 -34.32502 -31.73397 -30.47930 -27.47707 -25.10790 -23.17912 -20.39515 -19.29595 -19.27381 -16.92242 -16.73466 -16.31273 -16.16655 -15.94058 -14.97845 -14.31619 -14.14422 -13.53233 -13.47512 -13.32883 -13.19273 -12.78705 -12.68538 -12.07018 -11.88421 -11.44809 -11.02006 -10.75621 -10.65924 -10.34960 -9.51462 -8.34728 -8.19402 -6.47335 -0.03784 0.35247 0.47220 1.08989 1.41384 1.41797 1.52927 1.64138 1.79412 2.37448 3.07124 3.98985 4.09503 4.22339 4.23266 4.45916 4.65850 4.77709 5.08732 5.27931 5.46144 5.51855 5.61220 5.92607 6.61938 7.25324 7.42543 8.85266 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.052845 B = 0.006318 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.728232 B = 4430.802423 C = 4874.135796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.586 4.586 8 H 0.065 0.935 9 C 0.249 3.751 10 H 0.032 0.968 11 O -0.571 6.571 12 C -0.111 4.111 13 S -0.076 6.076 14 C -0.215 4.215 15 C -0.129 4.129 16 C -0.122 4.122 17 C -0.208 4.208 18 S 0.077 5.923 19 H 0.264 0.736 20 H 0.359 0.641 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.151 0.849 24 H 0.176 0.824 25 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 -13.681 -0.558 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.625 4.625 8 H 0.084 0.916 9 C 0.189 3.811 10 H 0.049 0.951 11 O -0.375 6.375 12 C -0.261 4.261 13 S 0.166 5.834 14 C -0.444 4.444 15 C -0.168 4.168 16 C -0.153 4.153 17 C -0.347 4.347 18 S 0.336 5.664 19 H 0.073 0.927 20 H 0.204 0.796 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.168 0.832 24 H 0.193 0.807 25 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 8.212 -12.380 -0.094 14.856 hybrid contribution 1.101 -0.011 -0.270 1.134 sum 9.313 -12.391 -0.364 15.505 Atomic orbital electron populations 1.70214 1.07737 1.27762 1.47566 1.25922 0.95533 1.03023 0.93017 0.85463 0.78657 0.78329 0.78578 1.19634 1.20802 1.18772 1.21879 0.93685 0.91630 1.55314 0.91645 1.18916 0.87286 0.89126 0.85744 0.95058 1.86544 1.38819 1.96200 1.15938 1.24555 1.02249 0.94170 1.05082 1.85658 1.08770 0.97208 1.91740 1.26460 1.00627 1.02088 1.15263 1.20294 1.01455 0.90329 1.04684 1.20412 0.89884 1.02547 1.02443 1.25938 1.04290 0.94003 1.10454 1.84602 0.97672 1.09507 1.74625 0.92675 0.79573 0.89699 0.89682 0.83167 0.80676 0.78727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.88 12.84 21.45 0.28 -52.61 15 2 C 0.03 1.56 5.40 84.66 0.46 2.02 15 3 Si 0.97 42.40 29.54 68.60 2.03 44.43 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 15 7 C -0.59 -31.51 8.76 25.60 0.22 -31.28 15 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 15 9 C 0.25 12.66 2.87 29.85 0.09 12.74 15 10 H 0.03 1.81 8.14 -2.38 -0.02 1.79 15 11 O -0.57 -29.56 12.33 -148.98 -1.84 -31.39 15 12 C -0.11 -4.59 4.66 71.98 0.34 -4.26 15 13 S -0.08 -2.87 21.72 -56.49 -1.23 -4.10 15 14 C -0.22 -6.82 6.69 66.89 0.45 -6.38 15 15 C -0.13 -3.39 10.13 21.42 0.22 -3.18 15 16 C -0.12 -2.48 10.17 21.21 0.22 -2.26 15 17 C -0.21 -4.26 11.21 66.69 0.75 -3.51 15 18 S 0.08 2.14 22.32 -56.49 -1.26 0.88 15 19 H 0.26 14.70 8.31 -92.70 -0.77 13.93 15 20 H 0.36 16.38 9.04 -74.06 -0.67 15.71 15 21 H 0.08 3.42 8.14 -2.39 -0.02 3.40 15 22 H 0.08 3.35 8.14 -2.39 -0.02 3.33 15 23 H 0.15 3.56 8.06 -2.91 -0.02 3.54 15 24 H 0.18 2.29 8.06 -2.91 -0.02 2.27 15 25 H 0.20 2.61 8.06 -2.91 -0.02 2.59 15 Total: -1.00 -62.97 253.65 1.24 -61.73 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.53 Total: 17.16 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 2.73 Total: -36.10 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.28 Total: -52.61 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.84 Total: -31.39 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.49 Total: -3.22 kcal Total: -62.97 1.24 -61.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219753748.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.179 kcal (2) G-P(sol) polarization free energy of solvation -62.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds