Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99529 * 2 1 4 4 O 1.43748 * 109.87489 * 238.91900 * 2 1 3 5 5 C 1.44379 * 106.97541 * 214.06583 * 4 2 1 6 6 C 1.55000 * 103.49154 * 40.05741 * 5 4 2 7 7 C 1.54103 * 109.87821 * 121.08951 * 2 1 3 8 8 H 1.09000 * 110.59806 * 240.17605 * 7 2 1 9 9 S 1.81395 * 110.48727 * 2.77267 * 7 2 1 10 10 C 1.81409 * 102.99786 * 181.22329 * 9 7 2 11 11 C 1.52999 * 109.46814 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47494 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99860 * 17 15 13 21 21 H 1.09007 * 109.46624 * 298.91490 * 1 2 3 22 22 H 1.09001 * 109.47257 * 58.91243 * 1 2 3 23 23 H 1.08997 * 109.47300 * 178.91703 * 1 2 3 24 24 H 1.09002 * 110.61459 * 281.56311 * 5 4 2 25 25 H 1.08997 * 110.75463 * 158.62418 * 5 4 2 26 26 H 1.09007 * 110.90592 * 204.78256 * 6 5 4 27 27 H 1.08999 * 110.93586 * 81.18798 * 6 5 4 28 28 H 1.09000 * 109.47067 * 59.99940 * 10 9 7 29 29 H 1.09001 * 109.46593 * 299.99946 * 10 9 7 30 30 H 1.09000 * 109.47486 * 60.00033 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99310 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2378 -1.3642 -0.7649 6 6 2.9195 -1.8916 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.6616 -0.0874 1.8592 9 16 0.6738 -1.4250 2.2041 10 6 1.5055 -2.2151 3.6095 11 6 0.4602 -2.8450 4.5322 12 6 1.1617 -3.5119 5.7172 13 6 0.1321 -4.1318 6.6264 14 1 -0.9176 -4.0572 6.3836 15 6 0.5301 -4.7933 7.7687 16 7 1.8084 -4.8837 8.0647 17 14 -0.7460 -5.5623 8.8954 18 1 -2.1032 -5.3227 8.3424 19 1 -0.5023 -7.0238 8.9946 20 1 -0.6470 -4.9512 10.2453 21 1 -0.3633 0.4969 0.8996 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3634 -1.0274 -0.0194 24 1 4.0684 -0.6590 -0.7357 25 1 3.4610 -2.1907 -1.4396 26 1 3.8332 -2.0226 1.2372 27 1 2.3540 -2.8222 0.6103 28 1 2.0749 -1.4675 4.1617 29 1 2.1804 -2.9890 3.2439 30 1 -0.1089 -3.5926 3.9797 31 1 -0.2151 -2.0714 4.8978 32 1 1.8367 -4.2854 5.3512 33 1 1.7311 -2.7645 6.2698 34 1 2.0884 -5.3494 8.8681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224964777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -72.015338 kcal Electronic energy + Delta-G solvation = -13820.523761 eV Core-core repulsion = 11457.721371 eV Total energy + Delta-G solvation = -2362.802390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.55581 -34.46906 -32.54358 -32.12422 -31.56177 -27.50040 -26.10676 -23.40165 -22.33299 -21.34471 -20.15059 -16.89270 -16.53550 -16.09539 -15.77650 -15.02072 -14.61907 -14.46268 -13.89231 -13.45393 -12.77110 -12.52742 -12.45680 -12.31342 -11.77748 -11.59867 -11.41541 -11.21517 -11.10972 -10.90231 -10.80279 -10.47737 -9.91773 -9.79833 -9.57935 -9.26701 -9.08392 -8.38228 -7.43422 -6.03060 -4.05493 1.81552 2.82490 3.30164 3.37650 3.42474 3.66578 4.24501 4.44561 4.59064 4.85782 4.88670 5.01741 5.23297 5.33067 5.35256 5.45798 5.50973 5.55955 5.65094 5.74723 5.86619 5.89531 6.14252 6.21342 6.55032 6.70560 6.71426 7.01406 7.62429 7.74472 7.96117 8.38130 9.01311 9.58938 11.08386 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.061725 B = 0.004456 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.513341 B = 6281.861250 C = 6575.892499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 H 0.074 0.926 4 O -0.372 6.372 5 C 0.050 3.950 6 C -0.151 4.151 7 C -0.099 4.099 8 H 0.095 0.905 9 S -0.238 6.238 10 C -0.089 4.089 11 C -0.094 4.094 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 8.782 -15.538 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.092 0.908 4 O -0.291 6.291 5 C -0.028 4.028 6 C -0.191 4.191 7 C -0.228 4.228 8 H 0.114 0.886 9 S -0.007 6.007 10 C -0.236 4.236 11 C -0.133 4.133 12 C -0.012 4.012 13 C -0.558 4.558 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.348 8.785 -15.824 18.149 hybrid contribution 0.992 -0.522 1.305 1.721 sum 2.340 8.263 -14.518 16.868 Atomic orbital electron populations 1.21856 0.92949 1.04266 1.02557 1.22511 0.95935 0.94768 0.82821 0.90794 1.88895 1.39685 1.67740 1.32767 1.23506 0.87600 0.96420 0.95250 1.23583 1.00378 0.98741 0.96387 1.24606 0.98818 0.99763 0.99635 0.88635 1.86970 1.14820 1.71723 1.27231 1.23733 1.02018 1.01637 0.96253 1.21439 0.96353 0.99120 0.96349 1.19107 0.95809 0.95278 0.91001 1.21267 0.93332 1.34443 1.06761 0.92493 1.25024 0.95277 0.96295 0.97853 1.69974 1.14435 1.43146 1.26026 0.86518 0.81817 0.78977 0.80610 1.19656 1.20976 1.20985 0.89963 0.91791 0.90429 0.92192 0.88684 0.89869 0.88960 0.90829 0.90748 0.92460 0.92475 0.96491 0.96504 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.29 37.16 0.31 -1.49 16 2 C 0.10 1.12 4.06 -26.15 -0.11 1.01 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 O -0.37 -4.60 11.19 -35.23 -0.39 -4.99 16 5 C 0.05 0.49 7.72 38.21 0.29 0.78 16 6 C -0.15 -1.66 6.59 -24.72 -0.16 -1.82 16 7 C -0.10 -1.19 3.56 -25.20 -0.09 -1.28 16 8 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 9 S -0.24 -3.55 17.82 -107.50 -1.92 -5.47 16 10 C -0.09 -1.52 5.81 37.16 0.22 -1.31 16 11 C -0.09 -1.95 5.16 -26.73 -0.14 -2.09 16 12 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 13 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H 0.08 0.93 7.38 -51.93 -0.38 0.54 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.99 7.16 -51.93 -0.37 0.62 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.09 1.12 7.83 -51.93 -0.41 0.72 16 28 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 29 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 290.01 15.07 4.37 4.37 Total: -1.00 -30.09 290.01 -8.23 -38.32 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.78 Total: -3.54 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -0.23 Total: -19.19 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.39 Total: -4.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.92 Total: -5.47 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.09 -8.23 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224964777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.697 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds