Wall clock time and date at job start Sun Mar 29 2020 22:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.99529 * 2 1 4 4 O 1.43748 * 109.87489 * 238.91900 * 2 1 3 5 5 C 1.44379 * 106.97541 * 214.06583 * 4 2 1 6 6 C 1.55000 * 103.49154 * 40.05741 * 5 4 2 7 7 C 1.54103 * 109.87821 * 121.08951 * 2 1 3 8 8 H 1.09000 * 110.59806 * 240.17605 * 7 2 1 9 9 S 1.81395 * 110.48727 * 2.77267 * 7 2 1 10 10 C 1.81409 * 102.99786 * 181.22329 * 9 7 2 11 11 C 1.52999 * 109.46814 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47494 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99860 * 17 15 13 21 21 H 1.09007 * 109.46624 * 298.91490 * 1 2 3 22 22 H 1.09001 * 109.47257 * 58.91243 * 1 2 3 23 23 H 1.08997 * 109.47300 * 178.91703 * 1 2 3 24 24 H 1.09002 * 110.61459 * 281.56311 * 5 4 2 25 25 H 1.08997 * 110.75463 * 158.62418 * 5 4 2 26 26 H 1.09007 * 110.90592 * 204.78256 * 6 5 4 27 27 H 1.08999 * 110.93586 * 81.18798 * 6 5 4 28 28 H 1.09000 * 109.47067 * 59.99940 * 10 9 7 29 29 H 1.09001 * 109.46593 * 299.99946 * 10 9 7 30 30 H 1.09000 * 109.47486 * 60.00033 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99310 * 11 10 9 32 32 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 33 33 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 34 34 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1578 5 6 3.2378 -1.3642 -0.7649 6 6 2.9195 -1.8916 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.6616 -0.0874 1.8592 9 16 0.6738 -1.4250 2.2041 10 6 1.5055 -2.2151 3.6095 11 6 0.4602 -2.8450 4.5322 12 6 1.1617 -3.5119 5.7172 13 6 0.1321 -4.1318 6.6264 14 1 -0.9176 -4.0572 6.3836 15 6 0.5301 -4.7933 7.7687 16 7 1.8084 -4.8837 8.0647 17 14 -0.7460 -5.5623 8.8954 18 1 -2.1032 -5.3227 8.3424 19 1 -0.5023 -7.0238 8.9946 20 1 -0.6470 -4.9512 10.2453 21 1 -0.3633 0.4969 0.8996 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3634 -1.0274 -0.0194 24 1 4.0684 -0.6590 -0.7357 25 1 3.4610 -2.1907 -1.4396 26 1 3.8332 -2.0226 1.2372 27 1 2.3540 -2.8222 0.6103 28 1 2.0749 -1.4675 4.1617 29 1 2.1804 -2.9890 3.2439 30 1 -0.1089 -3.5926 3.9797 31 1 -0.2151 -2.0714 4.8978 32 1 1.8367 -4.2854 5.3512 33 1 1.7311 -2.7645 6.2698 34 1 2.0884 -5.3494 8.8681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224964777.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:32 Heat of formation + Delta-G solvation = -89.097314 kcal Electronic energy + Delta-G solvation = -13821.264491 eV Core-core repulsion = 11457.721371 eV Total energy + Delta-G solvation = -2363.543120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42519 -36.37535 -34.07962 -33.45424 -32.50664 -29.39601 -27.03704 -25.31462 -23.19671 -22.50108 -21.74741 -18.58246 -17.75225 -17.25475 -16.72036 -16.56059 -16.21914 -15.93143 -14.98913 -14.52557 -14.37974 -14.01634 -13.64522 -13.50039 -13.27090 -12.97830 -12.83013 -12.76404 -12.38319 -12.23577 -12.06565 -11.98068 -11.66874 -11.36155 -11.11455 -10.71778 -10.63160 -10.58164 -8.62700 -8.22613 -6.33718 0.66019 1.39715 1.40037 1.53627 1.60393 2.40224 2.83396 3.10923 3.35570 3.71691 3.97788 4.02574 4.07827 4.12642 4.22868 4.36107 4.51698 4.59205 4.66206 4.78734 4.81344 4.90116 4.96689 4.99373 5.03574 5.12385 5.29771 5.47561 5.66588 5.80756 5.87422 6.21070 6.82160 7.35795 8.89433 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.061725 B = 0.004456 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.513341 B = 6281.861250 C = 6575.892499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 H 0.095 0.905 4 O -0.390 6.390 5 C 0.051 3.949 6 C -0.152 4.152 7 C -0.094 4.094 8 H 0.108 0.892 9 S -0.244 6.244 10 C -0.085 4.085 11 C -0.080 4.080 12 C 0.030 3.970 13 C -0.545 4.545 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.054 0.946 32 H -0.005 1.005 33 H -0.004 1.004 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 9.385 -16.260 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.113 0.887 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.192 4.192 7 C -0.223 4.223 8 H 0.127 0.873 9 S -0.014 6.014 10 C -0.233 4.233 11 C -0.119 4.119 12 C -0.008 4.008 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.126 0.874 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.151 9.388 -16.549 19.061 hybrid contribution 1.089 -0.672 1.452 1.935 sum 2.240 8.715 -15.097 17.576 Atomic orbital electron populations 1.21825 0.93314 1.03238 1.03170 1.22606 0.95774 0.95541 0.82143 0.88691 1.88877 1.40828 1.68127 1.33191 1.23668 0.87293 0.97200 0.94484 1.23572 1.00418 0.97677 0.97508 1.24739 0.97680 1.00336 0.99564 0.87335 1.86989 1.16327 1.71716 1.26415 1.23456 1.00945 1.01872 0.97005 1.21142 0.96700 0.98736 0.95272 1.18986 0.95148 0.94286 0.92413 1.21698 0.93937 1.34949 1.07697 0.92343 1.25958 0.97460 0.96693 0.99518 1.70092 1.16492 1.43905 1.26782 0.85394 0.79208 0.78083 0.78349 1.18727 1.20233 1.20213 0.89981 0.90489 0.92212 0.90140 0.87384 0.88680 0.90521 0.90598 0.90629 0.92824 0.92686 0.98634 0.98604 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.29 71.98 0.60 -2.73 16 2 C 0.10 2.01 4.06 30.97 0.13 2.13 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 O -0.39 -8.78 11.19 -148.98 -1.67 -10.45 16 5 C 0.05 0.86 7.72 72.67 0.56 1.42 16 6 C -0.15 -3.05 6.59 31.90 0.21 -2.84 16 7 C -0.09 -2.07 3.56 31.59 0.11 -1.96 16 8 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 9 S -0.24 -7.09 17.82 -56.49 -1.01 -8.10 16 10 C -0.08 -2.91 5.81 71.98 0.42 -2.49 16 11 C -0.08 -3.37 5.16 30.60 0.16 -3.21 16 12 C 0.03 1.61 4.97 29.85 0.15 1.76 16 13 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 17 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H 0.08 1.73 7.38 -2.38 -0.02 1.71 16 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.48 7.16 -2.39 -0.02 1.46 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.08 1.79 7.83 -2.39 -0.02 1.77 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -64.16 290.01 3.70 -60.45 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.04 Total: 6.54 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 3.03 Total: -38.53 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.67 Total: -10.45 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.01 Total: -8.10 kcal Total: -64.16 3.70 -60.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224964777.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.643 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds