Wall clock time and date at job start Sun Mar 29 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.33258 * 2 1 4 4 O 1.44688 * 110.44730 * 237.72217 * 2 1 3 5 5 C 1.44428 * 105.13885 * 200.62940 * 4 2 1 6 6 C 1.54483 * 104.89902 * 40.49479 * 5 4 2 7 7 C 1.54477 * 110.37090 * 122.25386 * 2 1 3 8 8 H 1.09000 * 110.51486 * 24.27482 * 7 2 1 9 9 S 1.81407 * 110.51125 * 261.56369 * 7 2 1 10 10 C 1.81401 * 103.00039 * 178.90645 * 9 7 2 11 11 C 1.52994 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46863 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46824 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00428 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99606 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99655 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47260 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47524 * 119.99742 * 17 15 13 20 20 H 1.48501 * 109.47210 * 239.99738 * 17 15 13 21 21 H 1.09006 * 109.47413 * 297.74504 * 1 2 3 22 22 H 1.09001 * 109.47438 * 57.75018 * 1 2 3 23 23 H 1.09003 * 109.47473 * 177.75036 * 1 2 3 24 24 H 1.09002 * 110.37130 * 281.60836 * 5 4 2 25 25 H 1.08999 * 110.37385 * 159.38239 * 5 4 2 26 26 H 1.09005 * 110.50990 * 94.61536 * 6 5 4 27 27 H 1.09001 * 110.51072 * 217.32149 * 6 5 4 28 28 H 1.09004 * 109.46655 * 299.99939 * 10 9 7 29 29 H 1.08993 * 109.47324 * 59.99475 * 10 9 7 30 30 H 1.09004 * 109.47054 * 299.99258 * 11 10 9 31 31 H 1.08994 * 109.47612 * 59.99854 * 11 10 9 32 32 H 1.08994 * 109.47195 * 299.99284 * 12 11 10 33 33 H 1.08997 * 109.47546 * 59.99778 * 12 11 10 34 34 H 0.97008 * 119.99898 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0354 -0.7240 -1.1462 5 6 3.3897 -1.0846 -0.7973 6 6 3.3193 -1.5028 0.6881 7 6 2.0677 -0.7728 1.2247 8 1 1.3282 -1.4918 1.5775 9 16 2.5226 0.3768 2.5522 10 6 3.0847 -0.7295 3.8753 11 6 3.5101 0.1007 5.0879 12 6 3.9836 -0.8325 6.2042 13 6 4.4033 -0.0146 7.3984 14 1 4.3392 1.0630 7.3644 15 6 4.8701 -0.6420 8.5339 16 7 4.9487 -1.9541 8.5750 17 14 5.3910 0.3717 10.0139 18 1 5.2077 1.8148 9.7148 19 1 4.5595 -0.0007 11.1866 20 1 6.8206 0.1072 10.3167 21 1 -0.3634 0.4784 0.9095 22 1 -0.3634 0.5484 -0.8691 23 1 -0.3634 -1.0269 -0.0403 24 1 4.0537 -0.2288 -0.9196 25 1 3.7303 -1.9188 -1.4107 26 1 3.1986 -2.5826 0.7756 27 1 4.2114 -1.1729 1.2205 28 1 2.2718 -1.3977 4.1600 29 1 3.9315 -1.3177 3.5220 30 1 4.3229 0.7691 4.8035 31 1 2.6630 0.6886 5.4412 32 1 3.1707 -1.5005 6.4885 33 1 4.8307 -1.4207 5.8512 34 1 5.2768 -2.3956 9.3741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224964850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:35 Heat of formation + Delta-G solvation = -74.570806 kcal Electronic energy + Delta-G solvation = -13730.421974 eV Core-core repulsion = 11367.508770 eV Total energy + Delta-G solvation = -2362.913204 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.51485 -34.49868 -32.53084 -32.09575 -31.63189 -27.51493 -26.18855 -23.49791 -22.22460 -21.34585 -20.20257 -17.14750 -16.37922 -15.99322 -15.72261 -15.02692 -14.64172 -14.50179 -14.08608 -13.36421 -12.74810 -12.60130 -12.53561 -12.26309 -11.91979 -11.72749 -11.41929 -11.24591 -11.10470 -10.91135 -10.81193 -10.47768 -9.99599 -9.83032 -9.71515 -9.33073 -9.11522 -8.39610 -7.51948 -6.04316 -4.06840 1.77015 2.75497 3.29422 3.36999 3.41681 3.74654 4.30578 4.43262 4.43715 4.81279 4.92765 5.02684 5.16240 5.31854 5.38706 5.42609 5.45842 5.58022 5.60791 5.74722 5.76219 5.80427 5.96959 6.08947 6.51289 6.57987 6.67766 6.98143 7.60509 7.72079 7.94545 8.36315 8.99827 9.57651 11.07080 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062681 B = 0.004293 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.600054 B = 6520.038201 C = 6704.334113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.095 3.905 3 H 0.079 0.921 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.153 4.153 7 C -0.092 4.092 8 H 0.097 0.903 9 S -0.262 6.262 10 C -0.071 4.071 11 C -0.095 4.095 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 1.314 -16.805 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.037 3.963 3 H 0.096 0.904 4 O -0.290 6.290 5 C -0.029 4.029 6 C -0.192 4.192 7 C -0.221 4.221 8 H 0.115 0.885 9 S -0.033 6.033 10 C -0.219 4.219 11 C -0.134 4.134 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.673 2.242 -16.906 17.973 hybrid contribution 0.550 -0.955 1.140 1.586 sum -5.123 1.286 -15.766 16.628 Atomic orbital electron populations 1.21821 0.92449 1.03045 1.02983 1.22798 0.95528 0.95309 0.82680 0.90361 1.89186 1.27248 1.74791 1.37826 1.23363 0.84613 1.00176 0.94706 1.23380 0.97884 1.01182 0.96783 1.24583 1.00159 0.99800 0.97587 0.88481 1.86796 1.85385 1.17766 1.13358 1.23648 1.02921 0.99479 0.95882 1.21476 1.00512 0.98608 0.92823 1.19108 0.96346 0.94296 0.91434 1.21258 1.42809 0.93288 0.98512 0.92479 1.25022 0.95721 0.94916 0.98773 1.69972 1.46948 1.07857 1.28741 0.86516 0.78233 0.80502 0.82656 1.19658 1.20968 1.20977 0.90391 0.91624 0.91761 0.91827 0.88960 0.90254 0.89173 0.90543 0.90509 0.92370 0.92351 0.96426 0.96440 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.52 37.16 0.35 -1.08 16 2 C 0.10 1.10 3.49 -25.96 -0.09 1.01 16 3 H 0.08 0.93 7.83 -51.93 -0.41 0.53 16 4 O -0.37 -4.56 11.37 -35.23 -0.40 -4.96 16 5 C 0.05 0.50 7.62 37.94 0.29 0.79 16 6 C -0.15 -1.70 6.63 -25.16 -0.17 -1.86 16 7 C -0.09 -1.13 3.18 -25.17 -0.08 -1.21 16 8 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 9 S -0.26 -3.93 20.80 -107.50 -2.24 -6.17 16 10 C -0.07 -1.21 5.81 37.15 0.22 -0.99 16 11 C -0.10 -1.96 5.16 -26.73 -0.14 -2.10 16 12 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 28 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.08 1.26 7.85 -51.93 -0.41 0.85 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -29.76 293.81 -8.46 -38.22 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.80 Total: -3.73 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.17 Total: -18.35 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.40 Total: -4.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -2.24 Total: -6.17 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.76 -8.46 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224964850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.349 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds