Wall clock time and date at job start Sun Mar 29 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.33258 * 2 1 4 4 O 1.44688 * 110.44730 * 237.72217 * 2 1 3 5 5 C 1.44428 * 105.13885 * 200.62940 * 4 2 1 6 6 C 1.54483 * 104.89902 * 40.49479 * 5 4 2 7 7 C 1.54477 * 110.37090 * 122.25386 * 2 1 3 8 8 H 1.09000 * 110.51486 * 24.27482 * 7 2 1 9 9 S 1.81407 * 110.51125 * 261.56369 * 7 2 1 10 10 C 1.81401 * 103.00039 * 178.90645 * 9 7 2 11 11 C 1.52994 * 109.46913 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46863 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46824 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00428 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99606 * 180.02562 * 13 12 11 16 16 N 1.31507 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99655 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47260 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47524 * 119.99742 * 17 15 13 20 20 H 1.48501 * 109.47210 * 239.99738 * 17 15 13 21 21 H 1.09006 * 109.47413 * 297.74504 * 1 2 3 22 22 H 1.09001 * 109.47438 * 57.75018 * 1 2 3 23 23 H 1.09003 * 109.47473 * 177.75036 * 1 2 3 24 24 H 1.09002 * 110.37130 * 281.60836 * 5 4 2 25 25 H 1.08999 * 110.37385 * 159.38239 * 5 4 2 26 26 H 1.09005 * 110.50990 * 94.61536 * 6 5 4 27 27 H 1.09001 * 110.51072 * 217.32149 * 6 5 4 28 28 H 1.09004 * 109.46655 * 299.99939 * 10 9 7 29 29 H 1.08993 * 109.47324 * 59.99475 * 10 9 7 30 30 H 1.09004 * 109.47054 * 299.99258 * 11 10 9 31 31 H 1.08994 * 109.47612 * 59.99854 * 11 10 9 32 32 H 1.08994 * 109.47195 * 299.99284 * 12 11 10 33 33 H 1.08997 * 109.47546 * 59.99778 * 12 11 10 34 34 H 0.97008 * 119.99898 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0354 -0.7240 -1.1462 5 6 3.3897 -1.0846 -0.7973 6 6 3.3193 -1.5028 0.6881 7 6 2.0677 -0.7728 1.2247 8 1 1.3282 -1.4918 1.5775 9 16 2.5226 0.3768 2.5522 10 6 3.0847 -0.7295 3.8753 11 6 3.5101 0.1007 5.0879 12 6 3.9836 -0.8325 6.2042 13 6 4.4033 -0.0146 7.3984 14 1 4.3392 1.0630 7.3644 15 6 4.8701 -0.6420 8.5339 16 7 4.9487 -1.9541 8.5750 17 14 5.3910 0.3717 10.0139 18 1 5.2077 1.8148 9.7148 19 1 4.5595 -0.0007 11.1866 20 1 6.8206 0.1072 10.3167 21 1 -0.3634 0.4784 0.9095 22 1 -0.3634 0.5484 -0.8691 23 1 -0.3634 -1.0269 -0.0403 24 1 4.0537 -0.2288 -0.9196 25 1 3.7303 -1.9188 -1.4107 26 1 3.1986 -2.5826 0.7756 27 1 4.2114 -1.1729 1.2205 28 1 2.2718 -1.3977 4.1600 29 1 3.9315 -1.3177 3.5220 30 1 4.3229 0.7691 4.8035 31 1 2.6630 0.6886 5.4412 32 1 3.1707 -1.5005 6.4885 33 1 4.8307 -1.4207 5.8512 34 1 5.2768 -2.3956 9.3741 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224964850.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:35 Heat of formation + Delta-G solvation = -91.118829 kcal Electronic energy + Delta-G solvation = -13731.139550 eV Core-core repulsion = 11367.508770 eV Total energy + Delta-G solvation = -2363.630780 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40844 -36.38564 -34.08104 -33.43775 -32.51123 -29.41773 -27.05554 -25.39457 -23.13542 -22.50544 -21.77835 -18.61319 -18.04477 -16.92630 -16.71402 -16.53606 -16.17650 -16.03594 -15.18059 -14.50511 -14.35032 -13.94985 -13.73545 -13.44488 -13.27879 -12.98257 -12.83081 -12.77503 -12.45009 -12.23694 -12.12234 -11.99961 -11.66878 -11.35856 -11.09826 -10.88020 -10.80851 -10.57854 -8.72450 -8.22300 -6.33235 0.58898 1.40082 1.40604 1.52563 1.54278 2.40524 2.88829 3.11465 3.40204 3.53862 3.91447 4.00402 4.07712 4.08584 4.18386 4.32185 4.53701 4.56324 4.65462 4.78514 4.81768 4.90151 4.91911 4.96193 4.97839 5.11790 5.20918 5.47888 5.66460 5.72059 5.80967 6.21125 6.82619 7.36250 8.89674 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062681 B = 0.004293 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.600054 B = 6520.038201 C = 6704.334113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.074 0.926 4 O -0.383 6.383 5 C 0.047 3.953 6 C -0.153 4.153 7 C -0.087 4.087 8 H 0.101 0.899 9 S -0.266 6.266 10 C -0.067 4.067 11 C -0.081 4.081 12 C 0.030 3.970 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.055 0.945 32 H -0.004 1.004 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 1.904 -17.453 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.037 3.963 3 H 0.091 0.909 4 O -0.302 6.302 5 C -0.030 4.030 6 C -0.193 4.193 7 C -0.216 4.216 8 H 0.120 0.880 9 S -0.038 6.038 10 C -0.215 4.215 11 C -0.120 4.120 12 C -0.009 4.009 13 C -0.582 4.582 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.857 2.838 -17.560 18.727 hybrid contribution 0.593 -1.162 1.262 1.815 sum -5.263 1.676 -16.298 17.208 Atomic orbital electron populations 1.21827 0.91168 1.03510 1.03582 1.22821 0.96544 0.94838 0.82101 0.90858 1.89182 1.28194 1.74857 1.38015 1.23504 0.83940 1.01176 0.94332 1.23386 0.96909 1.01671 0.97284 1.24674 1.00942 0.99350 0.96609 0.88040 1.86748 1.85369 1.18038 1.13601 1.23367 1.03266 0.99281 0.95593 1.21174 1.00160 0.97780 0.92876 1.18985 0.94811 0.94419 0.92636 1.21692 1.43046 0.93722 0.99787 0.92302 1.25948 0.95590 0.96078 1.01994 1.70088 1.47707 1.09595 1.29834 0.85402 0.77963 0.79099 0.78616 1.18714 1.20276 1.20267 0.90165 0.90654 0.91402 0.91366 0.86913 0.89215 0.89843 0.90372 0.90089 0.92548 0.92607 0.98539 0.98461 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.52 71.98 0.69 -1.86 16 2 C 0.10 2.04 3.49 31.09 0.11 2.15 16 3 H 0.07 1.64 7.83 -2.39 -0.02 1.62 16 4 O -0.38 -8.61 11.37 -148.98 -1.69 -10.30 16 5 C 0.05 0.87 7.62 72.49 0.55 1.42 16 6 C -0.15 -3.13 6.63 31.61 0.21 -2.92 16 7 C -0.09 -1.98 3.18 31.61 0.10 -1.88 16 8 H 0.10 2.27 7.87 -2.39 -0.02 2.25 16 9 S -0.27 -7.69 20.80 -56.49 -1.18 -8.87 16 10 C -0.07 -2.25 5.81 71.98 0.42 -1.83 16 11 C -0.08 -3.36 5.16 30.59 0.16 -3.20 16 12 C 0.03 1.58 4.97 29.85 0.15 1.73 16 13 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.11 5.46 84.66 0.46 0.57 16 16 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 17 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 1.84 7.38 -2.39 -0.02 1.82 16 28 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.08 2.62 7.85 -2.39 -0.02 2.61 16 30 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -62.77 293.81 3.56 -59.21 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.04 Total: 6.39 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.08 Total: -36.62 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.99 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -1.69 Total: -10.30 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -7.69 SS G_CDS: -1.18 Total: -8.87 kcal Total: -62.77 3.56 -59.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224964850.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.905 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds