Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00212 * 2 1 4 4 C 1.50702 * 109.47398 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.28406 * 89.97654 * 4 3 2 6 6 O 1.21301 * 110.24604 * 179.97438 * 5 4 3 7 7 C 1.33636 * 109.81535 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.55292 * 179.97438 * 7 6 5 9 9 S 1.80998 * 109.47116 * 270.02365 * 8 7 6 10 10 C 1.76199 * 100.00013 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00102 * 179.72368 * 10 9 8 13 13 N 1.31634 * 120.00298 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47644 * 89.99884 * 14 12 10 16 16 H 1.48506 * 109.47143 * 209.99830 * 14 12 10 17 17 H 1.48501 * 109.47120 * 329.99545 * 14 12 10 18 18 N 1.31133 * 106.89915 * 0.22073 * 7 6 5 19 19 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47239 * 299.99456 * 1 2 3 21 21 H 1.08999 * 109.47031 * 60.00299 * 1 2 3 22 22 H 1.09004 * 109.47190 * 59.99712 * 3 2 1 23 23 H 1.08997 * 109.47094 * 300.00509 * 3 2 1 24 24 H 1.09001 * 109.47434 * 150.02127 * 8 7 6 25 25 H 1.08999 * 109.47072 * 30.02606 * 8 7 6 26 26 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2795 1.1251 -1.0465 6 8 5.4416 1.0337 -0.7109 7 6 5.5289 1.0274 0.6226 8 6 6.7917 0.9278 1.4389 9 16 7.1629 -0.8133 1.7659 10 6 8.6425 -0.6392 2.7067 11 1 9.0395 0.3440 2.9119 12 6 9.2946 -1.7654 3.1894 13 7 10.4002 -1.6353 3.8918 14 14 8.6039 -3.4657 2.8411 15 1 9.1771 -3.9826 1.5725 16 1 8.9592 -4.3819 3.9544 17 1 7.1261 -3.3843 2.7196 18 7 4.3052 1.1190 1.0851 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6886 1.8463 0.8900 23 1 1.6885 1.8463 -0.8899 24 1 6.6560 1.4540 2.3838 25 1 7.6171 1.3780 0.8876 26 1 10.8561 -2.4224 4.2289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225269055.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = 22.361686 kcal Electronic energy + Delta-G solvation = -13259.425531 eV Core-core repulsion = 10661.342198 eV Total energy + Delta-G solvation = -2598.083333 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.41847 -38.21165 -35.64505 -33.39229 -32.56002 -29.10399 -28.38591 -26.11913 -25.75905 -23.41746 -21.49300 -18.14359 -17.99087 -17.19661 -16.55564 -15.98793 -15.62841 -15.14043 -14.47623 -14.36532 -13.50950 -12.92720 -12.83579 -12.71275 -12.04718 -11.97303 -11.62930 -11.32766 -11.10807 -10.99692 -10.83302 -10.06109 -10.03391 -9.64233 -9.12147 -8.77329 -7.14360 -6.39554 -4.16308 1.18027 2.06227 2.83629 3.03288 3.24671 3.39409 3.39720 3.44678 3.97680 4.17386 4.21639 4.59263 4.83760 4.95996 5.00180 5.08149 5.11543 5.34501 5.41737 5.57330 5.76375 6.01046 6.11842 6.77384 7.83258 8.29351 8.32238 9.04486 10.69184 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.041078 B = 0.005984 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.474427 B = 4677.837976 C = 5085.056405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.383 6.383 3 C 0.160 3.840 4 C 0.162 3.838 5 N -0.373 5.373 6 O 0.086 5.914 7 C 0.222 3.778 8 C -0.012 4.012 9 S -0.163 6.163 10 C -0.513 4.513 11 H 0.096 0.904 12 C 0.098 3.902 13 N -0.873 5.873 14 Si 0.855 3.145 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.237 1.237 18 N -0.467 5.467 19 H 0.091 0.909 20 H 0.046 0.954 21 H 0.044 0.956 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 5.573 -6.817 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C 0.082 3.918 4 C -0.111 4.111 5 N -0.082 5.082 6 O 0.025 5.975 7 C 0.001 3.999 8 C -0.161 4.161 9 S 0.062 5.938 10 C -0.660 4.660 11 H 0.114 0.886 12 C -0.111 4.111 13 N -0.509 5.509 14 Si 0.680 3.320 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.161 1.161 18 N -0.202 5.202 19 H 0.109 0.891 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.102 0.898 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.971 4.440 -7.520 18.202 hybrid contribution 0.572 0.399 0.421 0.814 sum -15.399 4.839 -7.099 17.634 Atomic orbital electron populations 1.22797 0.79904 1.03369 1.00240 1.87981 1.20366 1.26207 1.95493 1.20337 0.82766 0.86090 1.02596 1.25283 0.98989 1.02632 0.84196 1.74581 0.89836 1.19832 1.23936 1.85308 1.22123 1.65044 1.25036 1.28241 0.96295 0.93794 0.81526 1.21722 0.89868 1.04528 0.99990 1.84727 1.36254 1.01069 1.71720 1.22083 1.07370 0.98183 1.38356 0.88589 1.24693 0.93961 0.99153 0.93315 1.69915 1.16334 1.30980 1.33680 0.86764 0.82175 0.83929 0.79135 1.19058 1.19648 1.16100 1.71919 0.99558 1.20099 1.28641 0.89090 0.93513 0.93756 0.89831 0.90469 0.86280 0.87076 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 15 2 O -0.38 -5.25 10.69 -35.23 -0.38 -5.62 15 3 C 0.16 2.00 6.56 36.01 0.24 2.23 15 4 C 0.16 2.70 7.85 -156.37 -1.23 1.47 15 5 N -0.37 -6.52 12.16 30.90 0.38 -6.14 15 6 O 0.09 1.53 11.31 18.12 0.20 1.73 15 7 C 0.22 4.01 7.77 -13.06 -0.10 3.91 15 8 C -0.01 -0.23 6.30 36.00 0.23 0.00 15 9 S -0.16 -3.84 19.39 -107.50 -2.08 -5.93 15 10 C -0.51 -13.96 10.04 30.94 0.31 -13.65 15 11 H 0.10 2.71 8.03 -52.49 -0.42 2.29 15 12 C 0.10 2.75 5.50 -17.43 -0.10 2.66 15 13 N -0.87 -25.37 13.97 55.49 0.78 -24.60 15 14 Si 0.86 20.80 27.74 -169.99 -4.72 16.09 15 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.24 -5.73 6.74 56.52 0.38 -5.35 15 18 N -0.47 -8.57 11.55 -9.87 -0.11 -8.69 15 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 15 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 15 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.12 2.09 8.14 -51.92 -0.42 1.66 15 25 H 0.11 1.83 8.14 -51.92 -0.42 1.40 15 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -31.24 256.11 -4.15 -35.39 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -2.54 Total: -4.10 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 0.46 Total: -1.99 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.04 Total: -39.43 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.17 Total: -3.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.72 Total: 16.09 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.08 Total: -5.93 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.24 -4.15 -35.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225269055.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.748 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds