Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 114.00212 * 2 1 4 4 C 1.50702 * 109.47398 * 179.97438 * 3 2 1 5 5 N 1.29946 * 126.28406 * 89.97654 * 4 3 2 6 6 O 1.21301 * 110.24604 * 179.97438 * 5 4 3 7 7 C 1.33636 * 109.81535 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.55292 * 179.97438 * 7 6 5 9 9 S 1.80998 * 109.47116 * 270.02365 * 8 7 6 10 10 C 1.76199 * 100.00013 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00250 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00102 * 179.72368 * 10 9 8 13 13 N 1.31634 * 120.00298 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99861 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47644 * 89.99884 * 14 12 10 16 16 H 1.48506 * 109.47143 * 209.99830 * 14 12 10 17 17 H 1.48501 * 109.47120 * 329.99545 * 14 12 10 18 18 N 1.31133 * 106.89915 * 0.22073 * 7 6 5 19 19 H 1.09005 * 109.47340 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47239 * 299.99456 * 1 2 3 21 21 H 1.08999 * 109.47031 * 60.00299 * 1 2 3 22 22 H 1.09004 * 109.47190 * 59.99712 * 3 2 1 23 23 H 1.08997 * 109.47094 * 300.00509 * 3 2 1 24 24 H 1.09001 * 109.47434 * 150.02127 * 8 7 6 25 25 H 1.08999 * 109.47072 * 30.02606 * 8 7 6 26 26 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2795 1.1251 -1.0465 6 8 5.4416 1.0337 -0.7109 7 6 5.5289 1.0274 0.6226 8 6 6.7917 0.9278 1.4389 9 16 7.1629 -0.8133 1.7659 10 6 8.6425 -0.6392 2.7067 11 1 9.0395 0.3440 2.9119 12 6 9.2946 -1.7654 3.1894 13 7 10.4002 -1.6353 3.8918 14 14 8.6039 -3.4657 2.8411 15 1 9.1771 -3.9826 1.5725 16 1 8.9592 -4.3819 3.9544 17 1 7.1261 -3.3843 2.7196 18 7 4.3052 1.1190 1.0851 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6886 1.8463 0.8900 23 1 1.6885 1.8463 -0.8899 24 1 6.6560 1.4540 2.3838 25 1 7.6171 1.3780 0.8876 26 1 10.8561 -2.4224 4.2289 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225269055.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = -1.157960 kcal Electronic energy + Delta-G solvation = -13260.445419 eV Core-core repulsion = 10661.342198 eV Total energy + Delta-G solvation = -2599.103222 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.77302 -39.12214 -36.97263 -34.76810 -34.67201 -30.36340 -29.54523 -27.88427 -26.91415 -24.75037 -22.81125 -19.97028 -19.42132 -18.61541 -17.44537 -17.16805 -16.91762 -16.63561 -16.27007 -15.78638 -14.92121 -14.82136 -13.85502 -13.68254 -13.49018 -13.26128 -13.16104 -13.01606 -12.88974 -12.31592 -12.22809 -11.93392 -11.22078 -11.17870 -10.84639 -10.61820 -9.09386 -8.51755 -6.26683 -0.25085 0.69378 1.20067 1.32428 1.46460 1.51478 1.73499 2.22513 2.29214 2.56904 2.78576 2.87202 3.18882 3.72168 4.03017 4.06109 4.34588 4.43482 4.47842 4.55467 4.61778 4.75858 4.84130 5.71083 5.99329 6.14161 6.91693 6.93201 8.60210 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.041078 B = 0.005984 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.474427 B = 4677.837976 C = 5085.056405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.158 3.842 4 C 0.163 3.837 5 N -0.382 5.382 6 O 0.081 5.919 7 C 0.218 3.782 8 C 0.003 3.997 9 S -0.182 6.182 10 C -0.519 4.519 11 H 0.073 0.927 12 C 0.049 3.951 13 N -0.912 5.912 14 Si 0.911 3.089 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.236 1.236 18 N -0.481 5.481 19 H 0.097 0.903 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 5.608 -7.504 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C 0.080 3.920 4 C -0.111 4.111 5 N -0.092 5.092 6 O 0.022 5.978 7 C -0.003 4.003 8 C -0.146 4.146 9 S 0.043 5.957 10 C -0.666 4.666 11 H 0.091 0.909 12 C -0.158 4.158 13 N -0.550 5.550 14 Si 0.733 3.267 15 H -0.185 1.185 16 H -0.185 1.185 17 H -0.159 1.159 18 N -0.217 5.217 19 H 0.115 0.885 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.806 4.481 -8.216 20.115 hybrid contribution 1.045 0.512 0.592 1.306 sum -16.761 4.993 -7.623 19.078 Atomic orbital electron populations 1.23043 0.77417 1.04431 1.01953 1.87914 1.23102 1.26910 1.95851 1.20643 0.80145 0.86269 1.04927 1.26081 1.00766 1.00962 0.83264 1.74581 0.89777 1.20497 1.24362 1.85299 1.22532 1.65190 1.24751 1.28035 0.96100 0.94369 0.81747 1.21638 0.91000 1.00810 1.01106 1.84521 1.34176 1.05942 1.71018 1.22233 1.08752 0.97292 1.38355 0.90905 1.25519 0.94272 1.02714 0.93257 1.69997 1.17682 1.32270 1.35001 0.85920 0.81515 0.79870 0.79390 1.18529 1.18507 1.15947 1.71938 0.99868 1.20251 1.29607 0.88460 0.91997 0.91809 0.87804 0.87797 0.85229 0.84960 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 15 2 O -0.42 -10.57 10.69 -148.98 -1.59 -12.16 15 3 C 0.16 3.51 6.56 71.24 0.47 3.98 15 4 C 0.16 5.10 7.85 138.46 1.09 6.19 15 5 N -0.38 -12.74 12.16 -60.34 -0.73 -13.48 15 6 O 0.08 2.78 11.31 74.90 0.85 3.63 15 7 C 0.22 7.58 7.77 88.38 0.69 8.26 15 8 C 0.00 0.11 6.30 71.24 0.45 0.56 15 9 S -0.18 -8.43 19.39 -56.49 -1.10 -9.52 15 10 C -0.52 -28.37 10.04 67.95 0.68 -27.69 15 11 H 0.07 4.19 8.03 -2.91 -0.02 4.17 15 12 C 0.05 2.71 5.50 84.86 0.47 3.18 15 13 N -0.91 -53.48 13.97 21.65 0.30 -53.18 15 14 Si 0.91 42.60 27.74 68.60 1.90 44.51 15 15 H -0.26 -11.88 7.11 99.48 0.71 -11.18 15 16 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 17 H -0.24 -10.87 6.74 99.48 0.67 -10.20 15 18 N -0.48 -16.87 11.55 -303.23 -3.50 -20.37 15 19 H 0.10 1.25 8.14 -2.38 -0.02 1.23 15 20 H 0.06 0.70 8.14 -2.39 -0.02 0.68 15 21 H 0.06 0.66 8.14 -2.39 -0.02 0.64 15 22 H 0.10 1.85 8.14 -2.38 -0.02 1.83 15 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.13 4.37 8.14 -2.39 -0.02 4.36 15 25 H 0.13 4.15 8.14 -2.40 -0.02 4.13 15 26 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -66.01 256.11 2.37 -63.64 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: 1.15 Total: 0.82 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 5.09 Total: -3.88 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -3.93 Total: -87.03 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.75 Total: -8.53 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.90 Total: 44.51 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.10 Total: -9.52 kcal Total: -66.01 2.37 -63.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225269055.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.483 kcal (2) G-P(sol) polarization free energy of solvation -66.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds