Wall clock time and date at job start Sun Mar 29 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48503 * 109.46901 * 269.99697 * 3 2 1 5 5 H 1.48501 * 109.46971 * 29.99530 * 3 2 1 6 6 H 1.48497 * 109.47306 * 149.99624 * 3 2 1 7 7 C 1.37884 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99579 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46898 * 179.97438 * 9 7 2 11 11 C 1.46896 * 111.00140 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47264 * 180.02562 * 11 10 9 13 13 C 1.38830 * 119.73674 * 90.00347 * 12 11 10 14 14 C 1.37745 * 120.67248 * 180.02562 * 13 12 11 15 15 C 1.39134 * 119.77479 * 359.97438 * 14 13 12 16 16 N 1.37689 * 133.50571 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.06274 * 359.97438 * 16 15 14 18 18 C 1.36830 * 109.86882 * 180.26034 * 16 15 14 19 19 C 1.34234 * 109.93384 * 359.54926 * 18 16 15 20 20 C 1.40664 * 119.33171 * 359.97438 * 15 14 13 21 21 C 1.36628 * 119.73900 * 269.97819 * 12 11 10 22 22 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47057 * 60.00355 * 9 7 2 24 24 H 1.08994 * 109.47668 * 299.99825 * 9 7 2 25 25 H 1.00901 * 110.99893 * 56.04423 * 10 9 7 26 26 H 1.09005 * 109.47105 * 59.99975 * 11 10 9 27 27 H 1.09002 * 109.47310 * 300.00061 * 11 10 9 28 28 H 1.08006 * 119.66716 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.11805 * 179.97438 * 14 13 12 30 30 H 1.07999 * 125.03261 * 179.71191 * 18 16 15 31 31 H 1.08000 * 126.50560 * 180.14906 * 19 18 16 32 32 H 1.07998 * 120.11354 * 0.04651 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2054 -3.6158 0.0005 11 6 1.5051 -4.9070 0.0011 12 6 2.5146 -6.0260 0.0018 13 6 2.9757 -6.5367 1.2075 14 6 3.8986 -7.5590 1.2306 15 6 4.3747 -8.0872 0.0347 16 7 5.2741 -9.0843 -0.2697 17 1 5.7561 -9.6178 0.3814 18 6 5.3915 -9.2061 -1.6275 19 6 4.5860 -8.3224 -2.2376 20 6 3.9035 -7.5669 -1.1843 21 6 2.9683 -6.5301 -1.1843 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5570 -0.8897 24 1 0.6239 -2.5567 0.8902 25 1 2.8403 -3.5487 0.7819 26 1 0.8799 -4.9817 -0.8886 27 1 0.8805 -4.9812 0.8914 28 1 2.6077 -6.1278 2.1370 29 1 4.2516 -7.9493 2.1737 30 1 6.0347 -9.9108 -2.1335 31 1 4.4669 -8.1905 -3.3029 32 1 2.6053 -6.1276 -2.1184 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229623971.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:20 Heat of formation + Delta-G solvation = 30.250359 kcal Electronic energy + Delta-G solvation = -14674.694839 eV Core-core repulsion = 12213.175822 eV Total energy + Delta-G solvation = -2461.519017 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.03446 -38.67870 -36.49753 -34.47623 -32.81952 -31.25162 -29.59259 -28.53023 -25.70229 -23.56252 -23.39006 -21.96139 -21.20210 -18.87799 -18.60553 -17.02225 -16.90928 -16.39327 -15.53411 -15.33983 -15.16435 -14.98275 -14.70646 -14.31358 -13.92517 -13.43523 -13.42345 -13.01048 -12.93588 -12.61127 -12.32862 -12.25289 -11.94803 -11.66383 -11.29125 -10.65782 -10.62426 -9.19720 -8.97029 -8.56871 -8.21702 -6.33422 0.26943 0.66579 1.41752 1.44156 1.55451 1.89513 2.33809 2.41089 2.94024 3.11095 3.77523 3.80934 4.03915 4.12909 4.32899 4.39049 4.53394 4.58722 4.75001 4.88969 4.95779 5.08551 5.13647 5.22657 5.26565 5.50629 5.61451 5.78492 5.86814 5.88808 6.02341 6.27017 6.45766 6.71362 6.81357 6.88774 7.37442 8.89781 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.048316 B = 0.004465 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.384595 B = 6268.799920 C = 6387.508886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.683 5.683 11 C 0.104 3.896 12 C -0.109 4.109 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.076 3.924 16 N -0.587 5.587 17 H 0.431 0.569 18 C 0.069 3.931 19 C -0.238 4.238 20 C -0.135 4.135 21 C -0.071 4.071 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.036 1.036 25 H 0.334 0.666 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.214 0.786 31 H 0.154 0.846 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.192 -20.077 0.427 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.314 5.314 11 C -0.025 4.025 12 C -0.111 4.111 13 C -0.124 4.124 14 C -0.146 4.146 15 C -0.032 4.032 16 N -0.192 5.192 17 H 0.270 0.730 18 C -0.057 4.057 19 C -0.263 4.263 20 C -0.140 4.140 21 C -0.091 4.091 22 H 0.075 0.925 23 H 0.018 0.982 24 H -0.018 1.018 25 H 0.151 0.849 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.150 0.850 29 H 0.165 0.835 30 H 0.231 0.769 31 H 0.171 0.829 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.193 -20.051 -0.190 22.964 hybrid contribution -0.373 0.876 1.014 1.391 sum 10.819 -19.175 0.823 22.032 Atomic orbital electron populations 1.70094 1.07819 1.28058 1.51466 1.25968 0.95813 1.03404 0.94475 0.85300 0.78492 0.77812 0.78485 1.19844 1.20469 1.18761 1.21536 0.93771 0.91435 1.50770 0.91891 1.19248 0.90674 0.88838 0.93356 1.60608 1.20355 1.01041 1.49354 1.20775 0.93921 0.87796 1.00027 1.19287 1.00251 0.97751 0.93774 1.20878 0.97509 0.96649 0.97359 1.20196 0.99792 0.98719 0.95852 1.18423 0.95866 0.93793 0.95129 1.41810 1.37844 1.31807 1.07710 0.72979 1.22436 1.00629 1.00763 0.81874 1.22001 1.03916 1.01619 0.98779 1.19577 1.00692 0.99283 0.94399 1.20187 0.96195 0.95048 0.97653 0.92547 0.98150 1.01840 0.84887 0.91961 0.95289 0.85030 0.83481 0.76905 0.82862 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.98 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.83 9.32 25.60 0.24 -31.59 16 8 H 0.06 3.64 7.81 -2.92 -0.02 3.62 16 9 C 0.21 11.63 5.44 85.56 0.47 12.09 16 10 N -0.68 -31.88 6.48 -521.99 -3.38 -35.26 16 11 C 0.10 4.09 5.79 85.56 0.50 4.59 16 12 C -0.11 -3.73 5.36 -20.10 -0.11 -3.84 16 13 C -0.10 -3.03 9.66 22.29 0.22 -2.81 16 14 C -0.13 -3.06 10.08 22.37 0.23 -2.83 16 15 C 0.08 1.89 7.28 39.03 0.28 2.18 16 16 N -0.59 -9.77 6.07 -187.61 -1.14 -10.91 16 17 H 0.43 3.93 8.96 -92.71 -0.83 3.10 16 18 C 0.07 1.07 11.81 83.00 0.98 2.05 16 19 C -0.24 -5.40 11.08 23.51 0.26 -5.14 16 20 C -0.13 -3.97 6.37 -20.20 -0.13 -4.09 16 21 C -0.07 -2.40 9.67 22.23 0.22 -2.19 16 22 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 23 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 24 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 25 H 0.33 14.91 8.71 -89.69 -0.78 14.13 16 26 H 0.06 2.51 8.08 -2.38 -0.02 2.49 16 27 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 28 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.11 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -71.93 280.54 0.92 -71.01 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -0.48 Total: 16.30 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.61 Total: -31.04 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -4.24 Total: -103.58 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.93 0.92 -71.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229623971.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.260 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds