Wall clock time and date at job start Sun Mar 29 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48501 * 109.47209 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47205 * 300.00035 * 3 2 1 6 6 H 1.48497 * 109.46897 * 60.00105 * 3 2 1 7 7 C 1.37881 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99900 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99857 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.46899 * 110.99957 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.37788 * 120.11231 * 259.97836 * 12 11 10 14 14 C 1.38798 * 120.66637 * 180.02562 * 13 12 11 15 15 C 1.36665 * 120.52498 * 359.97438 * 14 13 12 16 16 C 1.39590 * 119.76372 * 359.97438 * 15 14 13 17 17 C 1.46498 * 134.03041 * 180.35581 * 16 15 14 18 18 C 1.34233 * 106.99672 * 180.10012 * 17 16 15 19 19 N 1.36837 * 109.93996 * 359.59421 * 18 17 16 20 20 H 0.97000 * 125.06574 * 180.29038 * 19 18 17 21 21 C 1.37694 * 109.87181 * 0.26491 * 19 18 17 22 22 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46868 * 59.99803 * 9 7 2 24 24 H 1.08997 * 109.46979 * 299.99830 * 9 7 2 25 25 H 1.00899 * 110.99780 * 56.04467 * 10 9 7 26 26 H 1.09003 * 109.47191 * 60.00727 * 11 10 9 27 27 H 1.08997 * 109.47471 * 300.00168 * 11 10 9 28 28 H 1.07996 * 119.67076 * 0.02595 * 13 12 11 29 29 H 1.07994 * 119.73448 * 180.02562 * 14 13 12 30 30 H 1.07997 * 120.11393 * 180.02562 * 15 14 13 31 31 H 1.07997 * 126.50267 * 359.97438 * 17 16 15 32 32 H 1.08002 * 125.03336 * 179.86396 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 1.5054 -4.9070 -0.0012 12 6 2.5149 -6.0259 -0.0031 13 6 2.8222 -6.6777 -1.1776 14 6 3.7498 -7.7100 -1.1925 15 6 4.3754 -8.0978 -0.0409 16 6 4.0799 -7.4505 1.1600 17 6 4.5520 -7.5976 2.5390 18 6 3.8989 -6.6859 3.2767 19 7 3.0537 -5.9608 2.4815 20 1 2.4795 -5.2419 2.7884 21 6 3.1403 -6.4034 1.1805 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8411 -3.5489 0.7791 26 1 0.8795 -4.9814 -0.8906 27 1 0.8814 -4.9816 0.8894 28 1 2.3364 -6.3823 -2.0958 29 1 3.9796 -8.2103 -2.1216 30 1 5.0964 -8.9017 -0.0602 31 1 5.2848 -8.3066 2.8949 32 1 4.0253 -6.5427 4.3396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229623989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:22 Heat of formation + Delta-G solvation = 50.707292 kcal Electronic energy + Delta-G solvation = -15005.143191 eV Core-core repulsion = 12544.511253 eV Total energy + Delta-G solvation = -2460.631938 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.06628 -37.01267 -35.33279 -32.83747 -31.37964 -29.44385 -28.66904 -26.91693 -24.28889 -21.83287 -21.57625 -21.29713 -20.15566 -17.61200 -16.52342 -15.90556 -15.23749 -14.69416 -14.59217 -14.25097 -13.96926 -13.42737 -13.19598 -12.89390 -12.43847 -12.23569 -11.60711 -11.45486 -11.36944 -11.19372 -10.81495 -10.74939 -10.46244 -9.98934 -9.43487 -9.21059 -8.52865 -8.01864 -7.53074 -7.32207 -6.07625 -4.09870 1.33453 1.87204 2.85658 3.28306 3.31831 3.35781 3.41384 4.11317 4.40751 4.86492 4.97233 5.21411 5.26734 5.28360 5.43110 5.52974 5.60931 5.74888 5.87201 5.99456 6.11415 6.22217 6.33416 6.77073 6.82866 6.90250 6.96552 7.16558 7.33129 7.37635 7.66473 7.73869 8.06625 8.31420 8.53358 8.99637 9.55481 11.03407 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035348 B = 0.005547 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.942325 B = 5046.170576 C = 5387.499222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.681 5.681 11 C 0.096 3.904 12 C -0.074 4.074 13 C -0.089 4.089 14 C -0.143 4.143 15 C -0.084 4.084 16 C -0.112 4.112 17 C -0.212 4.212 18 C 0.050 3.950 19 N -0.593 5.593 20 H 0.416 0.584 21 C 0.103 3.897 22 H 0.261 0.739 23 H 0.030 0.970 24 H -0.015 1.015 25 H 0.325 0.675 26 H 0.077 0.923 27 H 0.020 0.980 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.240 -15.095 4.025 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.312 5.312 11 C -0.034 4.034 12 C -0.077 4.077 13 C -0.109 4.109 14 C -0.163 4.163 15 C -0.103 4.103 16 C -0.117 4.117 17 C -0.238 4.238 18 C -0.077 4.077 19 N -0.196 5.196 20 H 0.253 0.747 21 C -0.004 4.004 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.003 0.997 25 H 0.141 0.859 26 H 0.095 0.905 27 H 0.038 0.962 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.081 -14.850 3.406 16.404 hybrid contribution -0.217 1.292 1.113 1.719 sum 5.865 -13.557 4.519 15.447 Atomic orbital electron populations 1.69972 1.06092 1.26754 1.50913 1.24993 0.94885 0.99409 0.95259 0.86418 0.80089 0.83232 0.77554 1.19633 1.20890 1.21079 1.21214 0.93573 0.90150 1.50361 0.91910 1.19606 0.90576 0.87356 0.95856 1.60734 1.20898 1.00610 1.48925 1.20829 0.93380 0.88695 1.00469 1.19041 0.99757 0.98472 0.90459 1.20725 0.97998 0.95615 0.96593 1.20595 0.98866 0.99000 0.97792 1.20158 0.99742 0.99424 0.90969 1.19177 0.99872 0.98532 0.94080 1.21610 1.06185 1.04380 0.91597 1.21780 0.94411 0.94920 0.96586 1.41864 1.38482 1.33039 1.06189 0.74740 1.18132 0.99830 0.97298 0.85182 0.92916 0.95170 0.99715 0.85857 0.90473 0.96205 0.85717 0.86337 0.86583 0.84014 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.07 5.44 -4.98 -0.03 5.04 16 10 N -0.68 -14.97 6.48 -116.34 -0.75 -15.72 16 11 C 0.10 1.76 5.83 -4.98 -0.03 1.73 16 12 C -0.07 -1.24 5.41 -104.47 -0.56 -1.81 16 13 C -0.09 -1.36 9.64 -39.54 -0.38 -1.74 16 14 C -0.14 -1.93 9.97 -39.94 -0.40 -2.33 16 15 C -0.08 -1.14 10.05 -39.65 -0.40 -1.54 16 16 C -0.11 -1.67 6.37 -105.14 -0.67 -2.34 16 17 C -0.21 -2.65 11.08 -37.67 -0.42 -3.07 16 18 C 0.05 0.57 11.81 -16.73 -0.20 0.38 16 19 N -0.59 -8.08 6.07 -10.65 -0.06 -8.14 16 20 H 0.42 5.22 8.96 -40.82 -0.37 4.85 16 21 C 0.10 1.64 6.98 -83.99 -0.59 1.05 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H -0.01 -0.41 8.14 -51.93 -0.42 -0.83 16 25 H 0.33 6.94 8.71 -39.29 -0.34 6.60 16 26 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.12 1.75 8.03 -52.49 -0.42 1.33 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -31.71 280.54 -9.01 -40.72 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.05 Total: 6.38 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -4.09 Total: -18.12 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.08 Total: -49.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.71 -9.01 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229623989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.428 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds