Wall clock time and date at job start Sun Mar 29 2020 21:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00173 * 2 1 4 4 H 1.09003 * 110.36561 * 30.72895 * 3 2 1 5 5 C 1.54380 * 110.32619 * 268.54801 * 3 2 1 6 6 N 1.48566 * 104.59262 * 217.24863 * 5 3 2 7 7 C 1.46900 * 110.99544 * 159.03952 * 6 5 3 8 8 C 1.52998 * 109.46969 * 170.00138 * 7 6 5 9 9 C 1.50700 * 109.47250 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99999 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00070 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99716 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46705 * 90.00641 * 13 11 9 15 15 H 1.48507 * 109.46532 * 209.99911 * 13 11 9 16 16 H 1.48494 * 109.47506 * 329.99914 * 13 11 9 17 17 C 1.48561 * 104.22161 * 39.48414 * 6 5 3 18 18 C 1.54264 * 110.32466 * 152.90717 * 3 2 1 19 19 H 1.08995 * 110.32435 * 237.79362 * 18 3 2 20 20 O 1.42899 * 110.32291 * 0.02562 * 18 3 2 21 21 C 1.42903 * 113.99762 * 207.08944 * 20 18 3 22 22 H 1.08999 * 109.47543 * 299.99785 * 1 2 3 23 23 H 1.09008 * 109.47071 * 59.99717 * 1 2 3 24 24 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 25 25 H 1.08999 * 110.41013 * 98.47300 * 5 3 2 26 26 H 1.08999 * 110.40872 * 336.02687 * 5 3 2 27 27 H 1.09004 * 109.47297 * 289.99585 * 7 6 5 28 28 H 1.09004 * 109.47326 * 50.00356 * 7 6 5 29 29 H 1.09005 * 109.47176 * 299.99860 * 8 7 6 30 30 H 1.09004 * 109.47568 * 59.99584 * 8 7 6 31 31 H 0.97000 * 119.99547 * 179.97438 * 12 11 9 32 32 H 1.08999 * 110.40911 * 79.29586 * 17 6 5 33 33 H 1.09000 * 110.40971 * 201.73791 * 17 6 5 34 34 H 1.09004 * 109.46647 * 180.02562 * 21 20 18 35 35 H 1.08995 * 109.46797 * 299.99509 * 21 20 18 36 36 H 1.08997 * 109.47461 * 60.00101 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3620 2.0093 0.5222 5 6 2.2618 1.7804 -1.4472 6 7 3.5449 2.5262 -1.3786 7 6 4.1730 2.6159 -2.7035 8 6 5.3498 3.5919 -2.6449 9 6 5.9938 3.6845 -4.0043 10 1 5.6026 3.1055 -4.8277 11 6 7.0819 4.5092 -4.1969 12 7 7.5580 5.2146 -3.1942 13 14 7.8805 4.6234 -5.8817 14 1 7.2339 5.7078 -6.6635 15 1 9.3269 4.9213 -5.7246 16 1 7.7158 3.3321 -6.5962 17 6 4.3815 1.7281 -0.4458 18 6 3.4046 1.2711 0.6588 19 1 3.4409 1.9580 1.5043 20 8 3.7209 -0.0566 1.0822 21 6 4.6273 -0.1144 2.1855 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.4572 2.4377 -1.7769 26 1 2.3543 0.9256 -2.1171 27 1 4.5322 1.6313 -3.0028 28 1 3.4415 2.9720 -3.4291 29 1 4.9907 4.5766 -2.3456 30 1 6.0813 3.2360 -1.9194 31 1 8.3237 5.7945 -3.3297 32 1 4.8057 0.8652 -0.9591 33 1 5.1729 2.3461 -0.0215 34 1 4.8168 -1.1558 2.4458 35 1 5.5654 0.3676 1.9106 36 1 4.1912 0.4008 3.0414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234787036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:30 Heat of formation + Delta-G solvation = -84.641209 kcal Electronic energy + Delta-G solvation = -16469.457712 eV Core-core repulsion = 13761.073614 eV Total energy + Delta-G solvation = -2708.384098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.56202 -37.04327 -36.50126 -33.27263 -31.17894 -28.51690 -28.07096 -26.33087 -26.25329 -24.12648 -21.66602 -20.71177 -19.90954 -17.21204 -16.65257 -16.01516 -15.50483 -15.09887 -15.02189 -14.51935 -14.26819 -13.92343 -13.67387 -13.29448 -12.84438 -12.28056 -11.91847 -11.76624 -11.62091 -11.39459 -11.15351 -10.97202 -10.87691 -10.77831 -10.53135 -9.83722 -9.63361 -9.43100 -9.28168 -9.10999 -8.32941 -7.97724 -5.98789 -4.01216 3.33032 3.38991 3.42438 3.55538 3.97198 4.44316 4.68849 4.73640 4.75242 5.14320 5.26560 5.31215 5.35939 5.37239 5.38945 5.48732 5.57530 5.64870 5.73439 5.91138 5.96237 6.02552 6.18120 6.32123 6.43137 6.92784 7.09363 7.20643 7.39995 7.49577 7.75555 7.88710 8.07561 8.43790 9.05905 9.62439 11.12672 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.005468 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.562709 B = 5119.661347 C = 5584.734282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.088 3.912 4 H 0.076 0.924 5 C 0.008 3.992 6 N -0.503 5.503 7 C 0.053 3.947 8 C 0.031 3.969 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.015 3.985 18 C 0.086 3.914 19 H 0.077 0.923 20 O -0.363 6.363 21 C 0.028 3.972 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.028 -8.649 9.368 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.029 3.971 4 H 0.094 0.906 5 C -0.121 4.121 6 N -0.229 5.229 7 C -0.074 4.074 8 C -0.007 4.007 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.113 4.113 18 C 0.027 3.973 19 H 0.095 0.905 20 O -0.280 6.280 21 C -0.069 4.069 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.929 -8.321 9.505 16.704 hybrid contribution 0.599 -0.179 -1.127 1.289 sum -10.330 -8.500 8.378 15.784 Atomic orbital electron populations 1.22793 0.81900 1.02463 0.99707 1.88076 1.18691 1.26333 1.94792 1.23047 0.93397 0.84971 0.95692 0.90598 1.23619 0.94941 0.97439 0.96083 1.65495 1.02428 1.43179 1.11818 1.22538 0.98203 0.99624 0.87037 1.19032 0.90784 0.94094 0.96771 1.21199 1.13670 1.25444 0.95805 0.92783 1.24990 0.96964 0.95562 0.96751 1.69976 1.24797 1.27766 1.30739 0.86591 0.78540 0.78387 0.84459 1.20630 1.21215 1.19914 1.23606 0.96447 0.97030 0.94245 1.23080 0.93115 0.84620 0.96446 0.90545 1.88051 1.64472 1.25544 1.49940 1.22804 0.92934 1.02417 0.88752 0.94319 0.94180 0.89863 0.90155 0.92807 0.95559 0.91932 0.95707 0.96621 0.93008 0.92566 0.89427 0.89869 0.93871 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.87 101.05 1.10 1.39 16 2 O -0.36 -5.26 9.48 -56.60 -0.54 -5.80 16 3 C 0.09 1.26 3.52 -25.35 -0.09 1.17 16 4 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 5 C 0.01 0.13 6.19 -2.18 -0.01 0.11 16 6 N -0.50 -9.55 5.34 -229.96 -1.23 -10.77 16 7 C 0.05 1.16 4.77 -3.83 -0.02 1.14 16 8 C 0.03 0.81 5.09 -27.88 -0.14 0.67 16 9 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -27.09 13.29 55.43 0.74 -26.35 16 13 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 C 0.02 0.27 5.65 -2.18 -0.01 0.26 16 18 C 0.09 1.29 3.52 -25.35 -0.09 1.21 16 19 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 20 O -0.36 -5.56 9.48 -56.60 -0.54 -6.10 16 21 C 0.03 0.32 10.87 101.05 1.10 1.42 16 22 H 0.04 0.34 8.10 -51.93 -0.42 -0.08 16 23 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.90 7.94 -51.93 -0.41 0.49 16 27 H 0.03 0.58 7.77 -51.93 -0.40 0.18 16 28 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.02 0.43 7.47 -51.93 -0.39 0.05 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.09 1.59 7.85 -51.93 -0.41 1.18 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -31.86 297.09 -6.85 -38.71 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -6.16 Total: -4.61 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 1.42 Total: -6.36 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.49 Total: -37.13 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.07 Total: -11.90 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.86 -6.85 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234787036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.927 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds