Wall clock time and date at job start Sun Mar 29 2020 21:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00173 * 2 1 4 4 H 1.09003 * 110.36561 * 30.72895 * 3 2 1 5 5 C 1.54380 * 110.32619 * 268.54801 * 3 2 1 6 6 N 1.48566 * 104.59262 * 217.24863 * 5 3 2 7 7 C 1.46900 * 110.99544 * 159.03952 * 6 5 3 8 8 C 1.52998 * 109.46969 * 170.00138 * 7 6 5 9 9 C 1.50700 * 109.47250 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99999 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00070 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99716 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46705 * 90.00641 * 13 11 9 15 15 H 1.48507 * 109.46532 * 209.99911 * 13 11 9 16 16 H 1.48494 * 109.47506 * 329.99914 * 13 11 9 17 17 C 1.48561 * 104.22161 * 39.48414 * 6 5 3 18 18 C 1.54264 * 110.32466 * 152.90717 * 3 2 1 19 19 H 1.08995 * 110.32435 * 237.79362 * 18 3 2 20 20 O 1.42899 * 110.32291 * 0.02562 * 18 3 2 21 21 C 1.42903 * 113.99762 * 207.08944 * 20 18 3 22 22 H 1.08999 * 109.47543 * 299.99785 * 1 2 3 23 23 H 1.09008 * 109.47071 * 59.99717 * 1 2 3 24 24 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 25 25 H 1.08999 * 110.41013 * 98.47300 * 5 3 2 26 26 H 1.08999 * 110.40872 * 336.02687 * 5 3 2 27 27 H 1.09004 * 109.47297 * 289.99585 * 7 6 5 28 28 H 1.09004 * 109.47326 * 50.00356 * 7 6 5 29 29 H 1.09005 * 109.47176 * 299.99860 * 8 7 6 30 30 H 1.09004 * 109.47568 * 59.99584 * 8 7 6 31 31 H 0.97000 * 119.99547 * 179.97438 * 12 11 9 32 32 H 1.08999 * 110.40911 * 79.29586 * 17 6 5 33 33 H 1.09000 * 110.40971 * 201.73791 * 17 6 5 34 34 H 1.09004 * 109.46647 * 180.02562 * 21 20 18 35 35 H 1.08995 * 109.46797 * 299.99509 * 21 20 18 36 36 H 1.08997 * 109.47461 * 60.00101 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3620 2.0093 0.5222 5 6 2.2618 1.7804 -1.4472 6 7 3.5449 2.5262 -1.3786 7 6 4.1730 2.6159 -2.7035 8 6 5.3498 3.5919 -2.6449 9 6 5.9938 3.6845 -4.0043 10 1 5.6026 3.1055 -4.8277 11 6 7.0819 4.5092 -4.1969 12 7 7.5580 5.2146 -3.1942 13 14 7.8805 4.6234 -5.8817 14 1 7.2339 5.7078 -6.6635 15 1 9.3269 4.9213 -5.7246 16 1 7.7158 3.3321 -6.5962 17 6 4.3815 1.7281 -0.4458 18 6 3.4046 1.2711 0.6588 19 1 3.4409 1.9580 1.5043 20 8 3.7209 -0.0566 1.0822 21 6 4.6273 -0.1144 2.1855 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.4572 2.4377 -1.7769 26 1 2.3543 0.9256 -2.1171 27 1 4.5322 1.6313 -3.0028 28 1 3.4415 2.9720 -3.4291 29 1 4.9907 4.5766 -2.3456 30 1 6.0813 3.2360 -1.9194 31 1 8.3237 5.7945 -3.3297 32 1 4.8057 0.8652 -0.9591 33 1 5.1729 2.3461 -0.0215 34 1 4.8168 -1.1558 2.4458 35 1 5.5654 0.3676 1.9106 36 1 4.1912 0.4008 3.0414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234787036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:29 Heat of formation + Delta-G solvation = -107.509697 kcal Electronic energy + Delta-G solvation = -16470.449364 eV Core-core repulsion = 13761.073614 eV Total energy + Delta-G solvation = -2709.375750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79211 -38.08957 -37.87119 -35.33377 -32.90940 -30.09417 -29.37277 -27.44652 -27.24798 -25.92995 -23.31019 -22.00290 -21.51866 -18.61924 -18.30512 -17.47667 -16.59651 -16.53697 -16.31934 -16.04163 -15.62566 -15.15332 -14.87209 -14.70567 -14.41624 -14.10617 -13.37761 -13.31134 -13.02831 -12.76395 -12.59049 -12.44878 -12.39216 -12.12674 -11.85686 -11.71725 -11.43885 -11.29005 -10.60791 -10.56863 -10.45281 -9.52721 -8.21103 -6.32794 1.40033 1.41757 1.52767 2.37798 2.48456 2.95915 3.12356 3.30249 3.48452 3.57051 4.04291 4.16589 4.32836 4.37295 4.45748 4.52276 4.55830 4.59195 4.59250 4.67664 4.77195 4.81979 4.85726 4.88752 4.92341 5.02807 5.41719 5.53547 5.73519 5.84226 6.01352 6.10597 6.25576 6.43115 6.83470 7.36414 8.91169 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.038742 B = 0.005468 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.562709 B = 5119.661347 C = 5584.734282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.384 6.384 3 C 0.093 3.907 4 H 0.103 0.897 5 C 0.009 3.991 6 N -0.513 5.513 7 C 0.070 3.930 8 C 0.040 3.960 9 C -0.547 4.547 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.265 1.265 17 C 0.015 3.985 18 C 0.091 3.909 19 H 0.097 0.903 20 O -0.382 6.382 21 C 0.021 3.979 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.043 0.957 27 H 0.020 0.980 28 H 0.069 0.931 29 H -0.003 1.003 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.135 -9.122 9.273 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.302 6.302 3 C 0.035 3.965 4 H 0.121 0.879 5 C -0.119 4.119 6 N -0.238 5.238 7 C -0.058 4.058 8 C 0.002 3.998 9 C -0.586 4.586 10 H 0.077 0.923 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.114 4.114 18 C 0.032 3.968 19 H 0.115 0.885 20 O -0.300 6.300 21 C -0.075 4.075 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.057 -8.810 9.421 17.656 hybrid contribution 0.924 -0.064 -1.033 1.387 sum -11.134 -8.874 8.388 16.525 Atomic orbital electron populations 1.23027 0.79760 1.03801 1.00914 1.88048 1.21090 1.26283 1.94824 1.23009 0.93490 0.85704 0.94342 0.87946 1.23706 0.93500 0.97109 0.97590 1.65374 1.03740 1.44583 1.10152 1.22170 0.96765 0.97825 0.89039 1.18845 0.91849 0.93669 0.95395 1.21616 1.14371 1.25845 0.96740 0.92266 1.25957 0.97482 0.94908 1.01155 1.70108 1.25358 1.28387 1.33217 0.85419 0.77459 0.78895 0.79091 1.19541 1.20615 1.18890 1.23584 0.96967 0.95839 0.94972 1.23054 0.92678 0.85081 0.96026 0.88531 1.88023 1.65162 1.25588 1.51259 1.23015 0.92308 1.03819 0.88357 0.92629 0.93382 0.88595 0.88324 0.93841 0.96160 0.91298 0.98504 0.99159 0.92684 0.94505 0.90837 0.88270 0.94288 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.87 113.37 1.23 1.61 16 2 O -0.38 -10.40 9.48 -128.55 -1.22 -11.62 16 3 C 0.09 2.48 3.52 31.49 0.11 2.59 16 4 H 0.10 2.19 7.85 -2.39 -0.02 2.17 16 5 C 0.01 0.28 6.19 86.45 0.54 0.82 16 6 N -0.51 -19.52 5.34 -881.47 -4.71 -24.23 16 7 C 0.07 3.11 4.77 86.30 0.41 3.52 16 8 C 0.04 2.20 5.09 29.85 0.15 2.35 16 9 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 10 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 13 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 17 C 0.02 0.55 5.65 86.45 0.49 1.03 16 18 C 0.09 2.62 3.52 31.49 0.11 2.73 16 19 H 0.10 2.38 7.85 -2.39 -0.02 2.36 16 20 O -0.38 -11.32 9.48 -128.55 -1.22 -12.54 16 21 C 0.02 0.46 10.87 113.37 1.23 1.69 16 22 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 23 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.04 1.42 7.94 -2.39 -0.02 1.40 16 27 H 0.02 0.91 7.77 -2.39 -0.02 0.90 16 28 H 0.07 2.94 8.08 -2.38 -0.02 2.92 16 29 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 30 H -0.01 -0.59 7.47 -2.39 -0.02 -0.61 16 31 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 32 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 33 H 0.07 2.79 7.85 -2.39 -0.02 2.77 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 Total: -1.00 -68.80 297.09 1.16 -67.64 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.02 Total: 5.81 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 4.97 Total: -14.72 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -4.42 Total: -81.34 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -2.44 Total: -24.16 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.80 1.16 -67.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234787036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.873 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds