Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46699 * 2 1 4 4 S 1.81398 * 109.47060 * 119.99785 * 2 1 3 5 5 C 1.81407 * 102.99964 * 295.00109 * 4 2 1 6 6 C 1.52998 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.50703 * 115.55163 * 39.92982 * 6 5 4 8 8 H 1.07998 * 120.00106 * 264.89019 * 7 6 5 9 9 C 1.37877 * 119.99421 * 84.88945 * 7 6 5 10 10 N 1.31509 * 120.00596 * 353.91936 * 9 7 6 11 11 Si 1.86810 * 119.99673 * 173.91629 * 9 7 6 12 12 H 1.48493 * 109.46928 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46666 * 119.99954 * 11 9 7 14 14 H 1.48497 * 109.46908 * 239.99889 * 11 9 7 15 15 C 1.52998 * 117.49726 * 254.22786 * 6 5 4 16 16 C 1.53001 * 117.49674 * 185.60522 * 6 5 4 17 17 C 1.52995 * 109.47209 * 240.00085 * 2 1 3 18 18 H 1.09010 * 109.46887 * 299.99913 * 17 2 1 19 19 C 1.52995 * 109.47165 * 180.02562 * 17 2 1 20 20 O 1.42904 * 109.47420 * 59.99781 * 17 2 1 21 21 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47185 * 299.99891 * 1 2 3 23 23 H 1.09000 * 109.47352 * 60.00168 * 1 2 3 24 24 H 1.09003 * 109.46842 * 300.00071 * 5 4 2 25 25 H 1.09000 * 109.46902 * 59.99989 * 5 4 2 26 26 H 0.97000 * 120.00623 * 174.97229 * 10 9 7 27 27 H 1.08999 * 117.49769 * 359.97438 * 15 6 5 28 28 H 1.08998 * 117.50110 * 145.02289 * 15 6 5 29 29 H 1.09010 * 117.49523 * 214.97779 * 16 6 5 30 30 H 1.08997 * 117.49966 * 359.97163 * 16 6 5 31 31 H 1.09000 * 109.47480 * 59.99696 * 19 17 2 32 32 H 1.09003 * 109.47141 * 180.02562 * 19 17 2 33 33 H 1.09002 * 109.47285 * 299.99545 * 19 17 2 34 34 H 0.96694 * 114.00329 * 180.02562 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2155 2.8309 6 6 2.0050 -0.3776 4.1713 7 6 3.3889 -0.9736 4.1968 8 1 3.5237 -2.0330 4.0356 9 6 4.4829 -0.1663 4.4258 10 7 4.3332 1.1379 4.5030 11 14 6.1780 -0.9253 4.6266 12 1 6.0779 -2.4013 4.4975 13 1 7.0844 -0.3973 3.5754 14 1 6.7192 -0.5806 5.9658 15 6 0.9318 -1.0457 5.0332 16 6 1.5085 0.3104 5.4445 17 6 2.0400 -0.7212 -1.2492 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7218 -1.2489 20 8 1.5637 -0.0476 -2.4160 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0001 1.2086 2.7141 25 1 0.4792 0.2882 2.8037 26 1 5.0886 1.7000 4.7362 27 1 -0.0868 -1.0623 4.6454 28 1 1.2265 -1.9165 5.6188 29 1 2.1829 0.3318 6.3007 30 1 0.8699 1.1859 5.3272 31 1 3.9330 -1.2358 -0.3589 32 1 3.9333 -1.2352 -2.1391 33 1 3.9337 0.3058 -1.2487 34 1 1.8487 -0.4513 -3.2472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235540250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = -43.242931 kcal Electronic energy + Delta-G solvation = -14433.559887 eV Core-core repulsion = 12072.005162 eV Total energy + Delta-G solvation = -2361.554725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.62564 -36.55673 -32.94885 -31.91341 -29.72730 -27.49733 -25.28587 -23.62087 -21.12928 -20.96172 -19.13495 -17.46109 -16.22780 -14.95979 -14.91009 -14.56795 -14.17540 -13.77815 -13.48367 -13.07608 -12.67915 -12.49680 -12.21063 -11.69925 -11.42945 -11.36700 -11.13293 -10.93405 -10.81853 -10.49655 -10.41767 -10.15594 -9.86791 -9.61817 -9.03830 -8.73531 -8.42320 -8.00560 -6.62361 -6.02051 -4.06056 2.42960 3.31098 3.39773 3.44193 3.62738 4.44427 4.50336 4.95788 5.14464 5.27524 5.33042 5.38563 5.66037 5.70818 5.91405 6.01314 6.07053 6.12734 6.18675 6.30617 6.39495 6.48096 6.51374 6.54605 6.73084 6.84461 7.05954 7.37116 7.47925 7.72027 7.90461 8.40100 8.93826 9.58972 11.07073 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.009110 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.389742 B = 3072.907111 C = 3839.496642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.082 0.918 4 S -0.199 6.199 5 C -0.030 4.030 6 C 0.056 3.944 7 C -0.481 4.481 8 H 0.063 0.937 9 C 0.077 3.923 10 N -0.877 5.877 11 Si 0.886 3.114 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C -0.207 4.207 16 C -0.152 4.152 17 C 0.127 3.873 18 H 0.059 0.941 19 C -0.187 4.187 20 O -0.568 6.568 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.047 0.953 26 H 0.259 0.741 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -2.257 -8.858 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.213 4.213 3 H 0.101 0.899 4 S 0.030 5.970 5 C -0.178 4.178 6 C 0.054 3.946 7 C -0.520 4.520 8 H 0.081 0.919 9 C -0.127 4.127 10 N -0.514 5.514 11 Si 0.714 3.286 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.245 4.245 16 C -0.192 4.192 17 C 0.068 3.932 18 H 0.077 0.923 19 C -0.244 4.244 20 O -0.374 6.374 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.139 -2.631 -8.418 9.743 hybrid contribution 0.540 0.667 -0.236 0.890 sum -3.599 -1.964 -8.655 9.577 Atomic orbital electron populations 1.21949 0.93917 1.02257 1.01558 1.23193 0.98690 1.02898 0.96524 0.89910 1.86900 1.75103 1.37519 0.97509 1.23021 0.98629 1.00087 0.96092 1.18478 0.93082 0.97563 0.85472 1.20348 0.88366 0.94053 1.49226 0.91891 1.24895 0.98572 0.94579 0.94606 1.70014 1.31305 1.03136 1.46914 0.86619 0.84680 0.79759 0.77531 1.19606 1.20968 1.21154 1.23067 0.97212 0.96747 1.07438 1.22566 1.02305 0.92825 1.01501 1.21415 0.93166 0.94499 0.84158 0.92328 1.22563 0.95762 1.03198 1.02903 1.86494 1.77193 1.57959 1.15772 0.92137 0.92852 0.92156 0.90524 0.93464 0.93170 0.91650 0.90259 0.89836 0.91944 0.89503 0.93022 0.91891 0.77952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.95 37.16 0.33 -1.80 16 2 C -0.08 -1.45 2.62 -26.73 -0.07 -1.52 16 3 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 4 S -0.20 -4.12 18.53 -107.50 -1.99 -6.11 16 5 C -0.03 -0.67 5.75 37.16 0.21 -0.45 16 6 C 0.06 1.35 1.65 -155.66 -0.26 1.09 16 7 C -0.48 -12.89 7.55 -34.44 -0.26 -13.15 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.08 2.08 5.39 -17.82 -0.10 1.99 16 10 N -0.88 -24.49 12.93 55.43 0.72 -23.77 16 11 Si 0.89 21.17 29.55 -169.99 -5.02 16.15 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.21 -4.50 9.88 -26.73 -0.26 -4.77 16 16 C -0.15 -3.53 9.47 -26.73 -0.25 -3.78 16 17 C 0.13 1.86 3.16 -26.74 -0.08 1.78 16 18 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 19 C -0.19 -2.69 9.30 37.15 0.35 -2.35 16 20 O -0.57 -7.54 12.65 -35.23 -0.45 -7.99 16 21 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.83 6.92 -51.93 -0.36 0.47 16 23 H 0.06 0.88 7.68 -51.93 -0.40 0.48 16 24 H 0.08 1.86 8.14 -51.92 -0.42 1.43 16 25 H 0.05 0.96 6.95 -51.92 -0.36 0.60 16 26 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 27 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 28 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.43 6.91 -51.93 -0.36 1.07 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.37 3.20 9.08 45.56 0.41 3.61 16 LS Contribution 293.72 15.07 4.43 4.43 Total: -1.00 -28.51 293.72 -7.54 -36.06 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.83 Total: 4.19 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -0.39 Total: -22.95 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.72 Total: -23.77 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.45 Total: -7.99 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.99 Total: -6.11 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.51 -7.54 -36.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235540250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.186 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds