Wall clock time and date at job start Sun Mar 29 2020 22:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46699 * 2 1 4 4 S 1.81398 * 109.47060 * 119.99785 * 2 1 3 5 5 C 1.81407 * 102.99964 * 295.00109 * 4 2 1 6 6 C 1.52998 * 109.46948 * 180.02562 * 5 4 2 7 7 C 1.50703 * 115.55163 * 39.92982 * 6 5 4 8 8 H 1.07998 * 120.00106 * 264.89019 * 7 6 5 9 9 C 1.37877 * 119.99421 * 84.88945 * 7 6 5 10 10 N 1.31509 * 120.00596 * 353.91936 * 9 7 6 11 11 Si 1.86810 * 119.99673 * 173.91629 * 9 7 6 12 12 H 1.48493 * 109.46928 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46666 * 119.99954 * 11 9 7 14 14 H 1.48497 * 109.46908 * 239.99889 * 11 9 7 15 15 C 1.52998 * 117.49726 * 254.22786 * 6 5 4 16 16 C 1.53001 * 117.49674 * 185.60522 * 6 5 4 17 17 C 1.52995 * 109.47209 * 240.00085 * 2 1 3 18 18 H 1.09010 * 109.46887 * 299.99913 * 17 2 1 19 19 C 1.52995 * 109.47165 * 180.02562 * 17 2 1 20 20 O 1.42904 * 109.47420 * 59.99781 * 17 2 1 21 21 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47185 * 299.99891 * 1 2 3 23 23 H 1.09000 * 109.47352 * 60.00168 * 1 2 3 24 24 H 1.09003 * 109.46842 * 300.00071 * 5 4 2 25 25 H 1.09000 * 109.46902 * 59.99989 * 5 4 2 26 26 H 0.97000 * 120.00623 * 174.97229 * 10 9 7 27 27 H 1.08999 * 117.49769 * 359.97438 * 15 6 5 28 28 H 1.08998 * 117.50110 * 145.02289 * 15 6 5 29 29 H 1.09010 * 117.49523 * 214.97779 * 16 6 5 30 30 H 1.08997 * 117.49966 * 359.97163 * 16 6 5 31 31 H 1.09000 * 109.47480 * 59.99696 * 19 17 2 32 32 H 1.09003 * 109.47141 * 180.02562 * 19 17 2 33 33 H 1.09002 * 109.47285 * 299.99545 * 19 17 2 34 34 H 0.96694 * 114.00329 * 180.02562 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4811 5 6 1.5664 0.2155 2.8309 6 6 2.0050 -0.3776 4.1713 7 6 3.3889 -0.9736 4.1968 8 1 3.5237 -2.0330 4.0356 9 6 4.4829 -0.1663 4.4258 10 7 4.3332 1.1379 4.5030 11 14 6.1780 -0.9253 4.6266 12 1 6.0779 -2.4013 4.4975 13 1 7.0844 -0.3973 3.5754 14 1 6.7192 -0.5806 5.9658 15 6 0.9318 -1.0457 5.0332 16 6 1.5085 0.3104 5.4445 17 6 2.0400 -0.7212 -1.2492 18 1 1.6767 -1.7490 -1.2492 19 6 3.5700 -0.7218 -1.2489 20 8 1.5637 -0.0476 -2.4160 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 2.0001 1.2086 2.7141 25 1 0.4792 0.2882 2.8037 26 1 5.0886 1.7000 4.7362 27 1 -0.0868 -1.0623 4.6454 28 1 1.2265 -1.9165 5.6188 29 1 2.1829 0.3318 6.3007 30 1 0.8699 1.1859 5.3272 31 1 3.9330 -1.2358 -0.3589 32 1 3.9333 -1.2352 -2.1391 33 1 3.9337 0.3058 -1.2487 34 1 1.8487 -0.4513 -3.2472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235540250.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:01 Heat of formation + Delta-G solvation = -60.284068 kcal Electronic energy + Delta-G solvation = -14434.298846 eV Core-core repulsion = 12072.005162 eV Total energy + Delta-G solvation = -2362.293684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.75515 -38.39922 -34.17016 -33.94771 -30.94196 -29.25146 -27.32510 -24.84015 -22.92208 -22.27279 -20.99868 -18.60936 -18.14107 -16.68297 -16.44608 -16.12785 -15.55160 -15.35346 -15.17175 -14.40968 -14.34166 -14.09678 -13.50324 -13.31926 -12.98375 -12.82433 -12.69601 -12.62617 -12.50879 -12.35005 -11.98585 -11.72446 -11.43903 -10.95849 -10.78313 -10.49535 -10.42462 -9.84234 -8.27589 -8.07063 -6.15741 0.89963 1.40084 1.43995 1.53678 2.00786 2.46209 3.22907 3.39673 3.49240 3.75676 3.95970 4.17410 4.24896 4.38642 4.42983 4.48555 4.63678 4.68308 4.77900 4.87334 4.95931 4.96877 5.01451 5.08617 5.20788 5.23074 5.34672 5.56434 5.62946 5.80568 6.40048 6.86448 6.90213 7.51007 9.00894 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.025579 B = 0.009110 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.389742 B = 3072.907111 C = 3839.496642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 H 0.065 0.935 4 S -0.226 6.226 5 C -0.020 4.020 6 C 0.025 3.975 7 C -0.486 4.486 8 H 0.049 0.951 9 C 0.035 3.965 10 N -0.904 5.904 11 Si 0.938 3.062 12 H -0.269 1.269 13 H -0.284 1.284 14 H -0.281 1.281 15 C -0.183 4.183 16 C -0.156 4.156 17 C 0.135 3.865 18 H 0.070 0.930 19 C -0.184 4.184 20 O -0.574 6.574 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.257 0.743 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.304 -3.038 -10.145 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.204 4.204 3 H 0.084 0.916 4 S 0.002 5.998 5 C -0.169 4.169 6 C 0.024 3.976 7 C -0.525 4.525 8 H 0.067 0.933 9 C -0.166 4.166 10 N -0.542 5.542 11 Si 0.765 3.235 12 H -0.193 1.193 13 H -0.210 1.210 14 H -0.207 1.207 15 C -0.220 4.220 16 C -0.196 4.196 17 C 0.075 3.925 18 H 0.088 0.912 19 C -0.242 4.242 20 O -0.384 6.384 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.880 -3.429 -9.709 11.394 hybrid contribution 0.734 0.906 0.068 1.168 sum -4.145 -2.523 -9.641 10.794 Atomic orbital electron populations 1.21894 0.92307 1.02937 1.01886 1.23204 0.99937 1.01569 0.95726 0.91628 1.86841 1.76202 1.37640 0.99083 1.22802 0.99495 0.98639 0.95943 1.18613 0.93087 0.99145 0.86754 1.20482 0.89974 0.93394 1.48652 0.93275 1.25487 1.01410 0.94948 0.94756 1.70102 1.31966 1.03973 1.48159 0.85804 0.81216 0.79079 0.77412 1.19316 1.21035 1.20733 1.23075 0.97733 0.95689 1.05534 1.22484 1.02436 0.94347 1.00286 1.21231 0.92987 0.94534 0.83738 0.91236 1.22523 0.95829 1.02510 1.03292 1.86437 1.77194 1.58288 1.16446 0.91241 0.93357 0.90903 0.93390 0.91519 0.93341 0.88954 0.90252 0.91952 0.90691 0.91893 0.89829 0.93092 0.75251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.95 71.98 0.64 -3.13 16 2 C -0.08 -2.49 2.62 30.59 0.08 -2.41 16 3 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 4 S -0.23 -9.26 18.53 -56.49 -1.05 -10.30 16 5 C -0.02 -0.90 5.75 71.98 0.41 -0.49 16 6 C 0.03 1.23 1.65 -52.93 -0.09 1.14 16 7 C -0.49 -26.25 7.55 25.60 0.19 -26.05 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.03 1.88 5.39 84.66 0.46 2.34 16 10 N -0.90 -51.31 12.93 21.45 0.28 -51.03 16 11 Si 0.94 43.82 29.55 68.60 2.03 45.84 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 C -0.18 -7.68 9.88 30.59 0.30 -7.38 16 16 C -0.16 -7.19 9.47 30.60 0.29 -6.90 16 17 C 0.13 3.65 3.16 30.59 0.10 3.75 16 18 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 19 C -0.18 -5.02 9.30 71.98 0.67 -4.35 16 20 O -0.57 -13.49 12.65 -148.98 -1.88 -15.37 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.05 1.42 6.92 -2.39 -0.02 1.40 16 23 H 0.07 1.93 7.68 -2.39 -0.02 1.91 16 24 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.07 2.64 6.95 -2.39 -0.02 2.62 16 26 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 27 H 0.09 3.36 8.08 -2.39 -0.02 3.34 16 28 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.06 3.10 8.14 -2.38 -0.02 3.08 16 30 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.06 2.03 6.91 -2.39 -0.02 2.02 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.40 5.34 9.08 -74.06 -0.67 4.66 16 Total: -1.00 -60.45 293.72 2.82 -57.63 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.39 Total: 16.72 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.06 Total: -43.49 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.28 Total: -51.03 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.88 Total: -15.37 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.30 kcal Total: -60.45 2.82 -57.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235540250.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.656 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds