Wall clock time and date at job start Sun Mar 29 2020 21:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.42894 * 109.46693 * 2 1 4 4 C 1.42901 * 113.99982 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84735 * 21.69412 * 4 3 2 6 6 C 1.53773 * 113.61690 * 250.49568 * 4 3 2 7 7 C 1.53784 * 87.08363 * 220.01456 * 6 4 3 8 8 H 1.08995 * 113.61429 * 270.79984 * 7 6 4 9 9 N 1.46902 * 113.61418 * 139.97553 * 7 6 4 10 10 C 1.46906 * 110.99573 * 105.86724 * 9 7 6 11 11 C 1.50699 * 109.46990 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99734 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00116 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99975 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99833 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47033 * 90.00053 * 15 13 11 17 17 H 1.48506 * 109.47354 * 210.00194 * 15 13 11 18 18 H 1.48507 * 109.47273 * 330.00074 * 15 13 11 19 19 C 1.53781 * 87.16995 * 25.39022 * 7 6 4 20 20 H 1.08998 * 113.61916 * 89.15406 * 19 7 6 21 21 O 1.42902 * 113.61636 * 220.06201 * 19 7 6 22 22 C 1.42894 * 114.00258 * 210.00313 * 21 19 7 23 23 H 1.08993 * 109.47090 * 300.00114 * 1 2 3 24 24 H 1.08997 * 109.46595 * 60.00262 * 1 2 3 25 25 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47090 * 239.99886 * 2 1 3 27 27 H 1.08997 * 109.46595 * 119.99738 * 2 1 3 28 28 H 1.09003 * 113.61739 * 105.46529 * 6 4 3 29 29 H 1.09000 * 113.69135 * 334.57884 * 6 4 3 30 30 H 1.00896 * 111.00219 * 229.82363 * 9 7 6 31 31 H 1.09002 * 109.46991 * 299.99841 * 10 9 7 32 32 H 1.09000 * 109.47202 * 60.00133 * 10 9 7 33 33 H 0.96998 * 119.99627 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47770 * 59.99266 * 22 21 19 35 35 H 1.08991 * 109.47183 * 179.97438 * 22 21 19 36 36 H 1.09005 * 109.46936 * 299.99860 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9267 0.5631 -0.3704 6 6 4.0072 1.9780 1.3288 7 6 4.9915 2.8078 0.4876 8 1 5.9155 2.2806 0.2504 9 7 5.2249 4.1581 1.0170 10 6 6.5484 4.2549 1.6473 11 6 6.7512 5.6507 2.1779 12 1 5.9745 6.3917 2.0591 13 6 7.9283 5.9818 2.8149 14 7 8.1051 7.1999 3.2783 15 14 9.2713 4.7000 3.0210 16 1 10.1826 4.7451 1.8493 17 1 10.0415 4.9844 4.2584 18 1 8.6575 3.3513 3.1190 19 6 3.9481 2.7606 -0.6410 20 1 3.2301 3.5800 -0.6065 21 8 4.5165 2.5734 -1.9387 22 6 3.7626 3.1711 -2.9952 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.4886 1.2044 1.9271 29 1 3.3065 2.5831 1.9041 30 1 5.1170 4.8536 0.2941 31 1 6.6125 3.5414 2.4689 32 1 7.3192 4.0304 0.9101 33 1 8.9331 7.4327 3.7268 34 1 3.6906 4.2457 -2.8276 35 1 4.2600 2.9847 -3.9470 36 1 2.7620 2.7391 -3.0170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252760262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:32 Heat of formation + Delta-G solvation = -70.340619 kcal Electronic energy + Delta-G solvation = -16216.117447 eV Core-core repulsion = 13508.353469 eV Total energy + Delta-G solvation = -2707.763978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77503 -37.24349 -35.99976 -33.65705 -31.92597 -30.82290 -27.07761 -26.97455 -24.35299 -23.24424 -22.69748 -21.04109 -19.59859 -17.33551 -16.89132 -16.24846 -15.81926 -15.37054 -15.13839 -14.39040 -14.33253 -13.79166 -13.22826 -13.07553 -12.85347 -12.58903 -12.35934 -12.02929 -11.68441 -11.52087 -11.31199 -11.26077 -11.06487 -10.70091 -10.44688 -10.38962 -9.88299 -9.64688 -9.24678 -9.16619 -8.59299 -7.55024 -6.04950 -4.02944 3.29938 3.37100 3.40267 3.48243 4.05283 4.43255 4.66082 4.71437 4.92897 4.98015 5.09421 5.11484 5.17562 5.24219 5.28512 5.37416 5.43333 5.53324 5.57504 5.66953 5.75757 5.78481 5.94589 6.12614 6.32968 6.42463 6.79965 7.01280 7.12511 7.38159 7.62373 7.88762 8.29257 8.64782 9.02726 9.56925 11.08362 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.005516 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.521874 B = 5075.114882 C = 5413.127762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.048 3.952 5 H 0.090 0.910 6 C -0.139 4.139 7 C 0.067 3.933 8 H 0.075 0.925 9 N -0.663 5.663 10 C 0.163 3.837 11 C -0.516 4.516 12 H 0.079 0.921 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.267 1.267 19 C 0.064 3.936 20 H 0.102 0.898 21 O -0.380 6.380 22 C 0.031 3.969 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.337 0.663 31 H 0.028 0.972 32 H -0.018 1.018 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.435 -14.247 -9.404 20.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.294 6.294 4 C -0.011 4.011 5 H 0.108 0.892 6 C -0.178 4.178 7 C -0.044 4.044 8 H 0.092 0.908 9 N -0.294 5.294 10 C 0.035 3.965 11 C -0.555 4.555 12 H 0.097 0.903 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.191 1.191 19 C 0.005 3.995 20 H 0.120 0.880 21 O -0.298 6.298 22 C -0.066 4.066 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.156 0.844 31 H 0.046 0.954 32 H 0.000 1.000 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.574 -14.183 -8.742 20.287 hybrid contribution 1.327 -0.679 -0.612 1.612 sum -10.247 -14.862 -9.354 20.332 Atomic orbital electron populations 1.21746 0.93989 1.01987 1.03102 1.22473 0.95380 0.84335 0.99878 1.87933 1.20790 1.25978 1.94676 1.24282 0.80781 0.98512 0.97495 0.89243 1.23327 0.98959 0.99513 0.96020 1.22986 0.96095 0.93483 0.91846 0.90764 1.60681 1.33910 1.01260 1.33502 1.20077 0.84299 0.98515 0.93573 1.21057 1.02572 0.95070 1.36760 0.90282 1.24899 0.98106 0.95208 0.95086 1.69901 1.26343 1.18639 1.39057 0.86817 0.82256 0.82587 0.77799 1.20315 1.21147 1.19143 1.24532 0.95993 0.96874 0.82055 0.88011 1.87928 1.50036 1.76731 1.15099 1.22777 0.95904 0.97293 0.90619 0.91759 0.92026 0.91352 0.93679 0.93397 0.91033 0.88081 0.84415 0.95434 1.00037 0.92647 0.93747 0.90015 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.59 6.51 37.16 0.24 0.83 16 3 O -0.37 -5.17 10.36 -35.23 -0.36 -5.53 16 4 C 0.05 0.67 4.13 -25.83 -0.11 0.57 16 5 H 0.09 1.16 7.89 -51.93 -0.41 0.75 16 6 C -0.14 -2.17 7.71 -25.92 -0.20 -2.37 16 7 C 0.07 1.19 3.95 -66.90 -0.26 0.92 16 8 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 9 N -0.66 -14.02 6.54 -107.13 -0.70 -14.72 16 10 C 0.16 4.04 4.36 -4.97 -0.02 4.02 16 11 C -0.52 -14.98 9.87 -34.44 -0.34 -15.32 16 12 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 15 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 19 C 0.06 0.98 3.74 -25.83 -0.10 0.89 16 20 H 0.10 1.57 7.87 -51.93 -0.41 1.16 16 21 O -0.38 -5.80 10.72 -35.23 -0.38 -6.17 16 22 C 0.03 0.36 10.85 101.05 1.10 1.46 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.34 6.96 8.55 -39.29 -0.34 6.63 16 31 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 32 H -0.02 -0.45 7.56 -51.93 -0.39 -0.84 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -31.52 301.41 -6.35 -37.87 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.15 Total: 1.98 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 0.59 Total: -8.01 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.07 Total: -41.87 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.74 Total: -11.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.52 -6.35 -37.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252760262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.470 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds