Wall clock time and date at job start Sun Mar 29 2020 21:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.42894 * 109.46693 * 2 1 4 4 C 1.42901 * 113.99982 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84735 * 21.69412 * 4 3 2 6 6 C 1.53773 * 113.61690 * 250.49568 * 4 3 2 7 7 C 1.53784 * 87.08363 * 220.01456 * 6 4 3 8 8 H 1.08995 * 113.61429 * 270.79984 * 7 6 4 9 9 N 1.46902 * 113.61418 * 139.97553 * 7 6 4 10 10 C 1.46906 * 110.99573 * 105.86724 * 9 7 6 11 11 C 1.50699 * 109.46990 * 180.02562 * 10 9 7 12 12 H 1.08005 * 119.99734 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00116 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99975 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 119.99833 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47033 * 90.00053 * 15 13 11 17 17 H 1.48506 * 109.47354 * 210.00194 * 15 13 11 18 18 H 1.48507 * 109.47273 * 330.00074 * 15 13 11 19 19 C 1.53781 * 87.16995 * 25.39022 * 7 6 4 20 20 H 1.08998 * 113.61916 * 89.15406 * 19 7 6 21 21 O 1.42902 * 113.61636 * 220.06201 * 19 7 6 22 22 C 1.42894 * 114.00258 * 210.00313 * 21 19 7 23 23 H 1.08993 * 109.47090 * 300.00114 * 1 2 3 24 24 H 1.08997 * 109.46595 * 60.00262 * 1 2 3 25 25 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47090 * 239.99886 * 2 1 3 27 27 H 1.08997 * 109.46595 * 119.99738 * 2 1 3 28 28 H 1.09003 * 113.61739 * 105.46529 * 6 4 3 29 29 H 1.09000 * 113.69135 * 334.57884 * 6 4 3 30 30 H 1.00896 * 111.00219 * 229.82363 * 9 7 6 31 31 H 1.09002 * 109.46991 * 299.99841 * 10 9 7 32 32 H 1.09000 * 109.47202 * 60.00133 * 10 9 7 33 33 H 0.96998 * 119.99627 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47770 * 59.99266 * 22 21 19 35 35 H 1.08991 * 109.47183 * 179.97438 * 22 21 19 36 36 H 1.09005 * 109.46936 * 299.99860 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9267 0.5631 -0.3704 6 6 4.0072 1.9780 1.3288 7 6 4.9915 2.8078 0.4876 8 1 5.9155 2.2806 0.2504 9 7 5.2249 4.1581 1.0170 10 6 6.5484 4.2549 1.6473 11 6 6.7512 5.6507 2.1779 12 1 5.9745 6.3917 2.0591 13 6 7.9283 5.9818 2.8149 14 7 8.1051 7.1999 3.2783 15 14 9.2713 4.7000 3.0210 16 1 10.1826 4.7451 1.8493 17 1 10.0415 4.9844 4.2584 18 1 8.6575 3.3513 3.1190 19 6 3.9481 2.7606 -0.6410 20 1 3.2301 3.5800 -0.6065 21 8 4.5165 2.5734 -1.9387 22 6 3.7626 3.1711 -2.9952 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.4886 1.2044 1.9271 29 1 3.3065 2.5831 1.9041 30 1 5.1170 4.8536 0.2941 31 1 6.6125 3.5414 2.4689 32 1 7.3192 4.0304 0.9101 33 1 8.9331 7.4327 3.7268 34 1 3.6906 4.2457 -2.8276 35 1 4.2600 2.9847 -3.9470 36 1 2.7620 2.7391 -3.0170 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252760262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:32 Heat of formation + Delta-G solvation = -94.289256 kcal Electronic energy + Delta-G solvation = -16217.155938 eV Core-core repulsion = 13508.353469 eV Total energy + Delta-G solvation = -2708.802469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97137 -38.27458 -37.33868 -35.43512 -33.83092 -31.74288 -29.04752 -27.97605 -25.51641 -24.62398 -23.61638 -22.90877 -20.89138 -19.03589 -18.31940 -17.55918 -16.95796 -16.48244 -16.41355 -16.00905 -15.69472 -15.41315 -14.68232 -14.27353 -14.06828 -13.98656 -13.71637 -13.34794 -12.96526 -12.85629 -12.57449 -12.50853 -12.24393 -12.10181 -11.95663 -11.78591 -11.57253 -11.44440 -10.83226 -10.81846 -10.25673 -9.24674 -8.31077 -6.35957 1.34650 1.36561 1.48066 2.33687 2.43456 3.02951 3.03535 3.45064 3.52865 3.64910 3.83448 3.87644 4.20566 4.25308 4.36818 4.44413 4.52033 4.53600 4.58737 4.74389 4.79429 4.82050 4.92782 4.97911 5.05308 5.13747 5.16888 5.29796 5.51483 5.92209 6.09961 6.35828 6.49169 6.61046 6.72647 7.29012 8.85704 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.005516 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.521874 B = 5075.114882 C = 5413.127762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.065 3.935 5 H 0.106 0.894 6 C -0.137 4.137 7 C 0.056 3.944 8 H 0.073 0.927 9 N -0.670 5.670 10 C 0.176 3.824 11 C -0.530 4.530 12 H 0.037 0.963 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.952 3.048 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.250 1.250 19 C 0.070 3.930 20 H 0.096 0.904 21 O -0.396 6.396 22 C 0.025 3.975 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.336 0.664 31 H 0.028 0.972 32 H -0.014 1.014 33 H 0.268 0.732 34 H 0.044 0.956 35 H 0.102 0.898 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.400 -16.837 -10.176 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.006 3.994 5 H 0.124 0.876 6 C -0.175 4.175 7 C -0.055 4.055 8 H 0.091 0.909 9 N -0.301 5.301 10 C 0.047 3.953 11 C -0.568 4.568 12 H 0.056 0.944 13 C -0.189 4.189 14 N -0.587 5.587 15 Si 0.775 3.225 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.174 1.174 19 C 0.011 3.989 20 H 0.114 0.886 21 O -0.315 6.315 22 C -0.071 4.071 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.154 0.846 31 H 0.046 0.954 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.571 -16.789 -9.531 22.508 hybrid contribution 1.202 0.186 -0.423 1.288 sum -10.369 -16.603 -9.955 21.961 Atomic orbital electron populations 1.21767 0.92755 1.03423 1.02632 1.22747 0.96448 0.82888 1.00860 1.87916 1.20288 1.28242 1.94644 1.24045 0.81350 0.98257 0.95748 0.87619 1.23283 0.98196 0.99300 0.96754 1.23124 0.96977 0.91467 0.93921 0.90913 1.60593 1.31789 1.03455 1.34244 1.19808 0.86215 0.95599 0.93685 1.21327 1.01809 0.96484 1.37224 0.94437 1.25876 1.00921 0.97563 0.94497 1.70052 1.27470 1.21055 1.40129 0.85653 0.78692 0.79988 0.78214 1.19139 1.20441 1.17358 1.24361 0.94817 0.97728 0.81978 0.88570 1.87890 1.51030 1.77139 1.15418 1.22980 0.96481 0.97244 0.90398 0.92483 0.92248 0.88975 0.92432 0.92629 0.89678 0.89504 0.84565 0.95429 0.99655 0.92282 0.93761 0.87995 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.99 0.74 -1.49 16 2 C 0.05 0.86 6.51 71.99 0.47 1.33 16 3 O -0.39 -10.05 10.36 -148.98 -1.54 -11.59 16 4 C 0.06 1.69 4.13 31.18 0.13 1.82 16 5 H 0.11 2.43 7.89 -2.38 -0.02 2.41 16 6 C -0.14 -4.06 7.71 31.12 0.24 -3.82 16 7 C 0.06 1.91 3.95 45.44 0.18 2.09 16 8 H 0.07 2.54 7.88 -2.39 -0.02 2.52 16 9 N -0.67 -28.47 6.54 -492.83 -3.22 -31.69 16 10 C 0.18 8.64 4.36 85.56 0.37 9.02 16 11 C -0.53 -31.46 9.87 25.60 0.25 -31.21 16 12 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 13 C 0.01 0.54 5.47 84.65 0.46 1.00 16 14 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 15 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 19 C 0.07 2.07 3.74 31.18 0.12 2.18 16 20 H 0.10 2.93 7.87 -2.39 -0.02 2.91 16 21 O -0.40 -11.44 10.72 -148.98 -1.60 -13.03 16 22 C 0.02 0.54 10.85 113.37 1.23 1.77 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.34 14.17 8.55 -89.70 -0.77 13.40 16 31 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 32 H -0.01 -0.69 7.56 -2.39 -0.02 -0.70 16 33 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -67.96 301.41 0.23 -67.73 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.22 Total: 18.97 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 4.19 Total: -17.32 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -2.92 Total: -91.31 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -3.14 Total: -24.62 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -67.96 0.23 -67.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252760262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.557 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds