Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42909 * 109.46957 * 2 1 4 4 C 1.42893 * 113.99788 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.85485 * 18.80060 * 4 3 2 6 6 C 1.53964 * 113.61264 * 247.53496 * 4 3 2 7 7 C 1.53780 * 87.01928 * 270.79921 * 6 4 3 8 8 H 1.09002 * 113.61338 * 89.22322 * 7 6 4 9 9 N 1.46895 * 113.61626 * 220.04831 * 7 6 4 10 10 C 1.46904 * 111.00014 * 254.13897 * 9 7 6 11 11 C 1.50701 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27796 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.53782 * 113.61518 * 150.00450 * 4 3 2 20 20 H 1.08994 * 113.68920 * 334.63790 * 19 4 3 21 21 O 1.42907 * 113.61495 * 203.74761 * 19 4 3 22 22 C 1.42902 * 113.99928 * 112.49971 * 21 19 4 23 23 H 1.09002 * 109.47178 * 59.99552 * 1 2 3 24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46702 * 299.99813 * 1 2 3 26 26 H 1.09003 * 109.47384 * 240.00496 * 2 1 3 27 27 H 1.08994 * 109.47379 * 119.99847 * 2 1 3 28 28 H 1.09002 * 113.61161 * 156.27951 * 6 4 3 29 29 H 1.08997 * 113.66443 * 25.32797 * 6 4 3 30 30 H 1.00901 * 110.99972 * 18.08901 * 9 7 6 31 31 H 1.09000 * 109.47038 * 59.99386 * 10 9 7 32 32 H 1.09007 * 109.46566 * 299.99918 * 10 9 7 33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46829 * 299.99696 * 22 21 19 35 35 H 1.08996 * 109.46726 * 60.00108 * 22 21 19 36 36 H 1.08998 * 109.46619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9278 0.5458 -0.3246 6 6 4.0036 2.0461 1.3029 7 6 3.8417 3.4321 0.6567 8 1 2.8678 3.8870 0.8373 9 7 4.9583 4.3451 0.9348 10 6 4.5691 5.3704 1.9122 11 6 5.7371 6.2867 2.1712 12 1 6.6750 6.1234 1.6611 13 6 5.6104 7.3296 3.0640 14 7 4.4684 7.5283 3.6854 15 14 7.0606 8.4606 3.3910 16 1 7.4695 9.1201 2.1247 17 1 6.6686 9.4942 4.3826 18 1 8.1966 7.6673 3.9252 19 6 3.9483 2.7254 -0.7050 20 1 3.2638 3.1194 -1.4562 21 8 5.2892 2.6059 -1.1845 22 6 5.3992 2.6069 -2.6093 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.0415 1.7687 1.4872 29 1 3.3625 1.8914 2.1708 30 1 5.7715 3.8367 1.2485 31 1 4.2703 4.8896 2.8436 32 1 3.7339 5.9495 1.5180 33 1 4.3794 8.2618 4.3138 34 1 4.8356 1.7682 -3.0178 35 1 4.9986 3.5406 -3.0039 36 1 6.4476 2.5132 -2.8927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252760264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = -66.788470 kcal Electronic energy + Delta-G solvation = -16274.359688 eV Core-core repulsion = 13566.749743 eV Total energy + Delta-G solvation = -2707.609945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75648 -37.19484 -35.59855 -33.45235 -31.74233 -30.57733 -26.62396 -26.42294 -24.58003 -23.22820 -22.86193 -21.30954 -19.45175 -16.83473 -16.52899 -15.87484 -15.59162 -15.53910 -14.84306 -14.52926 -13.76275 -13.68430 -13.59351 -13.02634 -12.61877 -12.38560 -12.27329 -11.70866 -11.67170 -11.31093 -11.26322 -11.12335 -10.78277 -10.62606 -10.47284 -10.20255 -9.94381 -9.47692 -9.17005 -8.91178 -8.41056 -7.09691 -5.96206 -3.97769 3.35672 3.38427 3.41666 3.45354 4.24724 4.49017 4.77908 4.85562 4.98185 5.08265 5.17106 5.21696 5.26675 5.39377 5.43938 5.51859 5.56276 5.69897 5.78241 5.80693 5.82481 5.89124 5.99227 6.22377 6.46377 6.51208 7.17695 7.33689 7.52984 7.57351 7.87889 8.22051 8.54373 8.73247 9.12234 9.66813 11.14883 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.005611 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.052408 B = 4988.835510 C = 5650.965642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.045 3.955 5 H 0.073 0.927 6 C -0.180 4.180 7 C 0.084 3.916 8 H 0.102 0.898 9 N -0.668 5.668 10 C 0.192 3.808 11 C -0.512 4.512 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.074 3.926 20 H 0.074 0.926 21 O -0.346 6.346 22 C 0.032 3.968 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.335 0.665 31 H -0.014 1.014 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -15.038 -9.140 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.283 6.283 4 C -0.014 4.014 5 H 0.091 0.909 6 C -0.219 4.219 7 C -0.029 4.029 8 H 0.120 0.880 9 N -0.297 5.297 10 C 0.066 3.934 11 C -0.551 4.551 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C 0.014 3.986 20 H 0.092 0.908 21 O -0.264 6.264 22 C -0.064 4.064 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.004 0.996 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.417 -14.331 -9.421 17.710 hybrid contribution 0.599 -0.146 0.855 1.054 sum -3.818 -14.477 -8.566 17.249 Atomic orbital electron populations 1.21746 0.93799 1.02030 1.03293 1.22508 0.95459 0.84066 0.99876 1.87873 1.19767 1.26029 1.94636 1.23615 0.81055 0.98492 0.98266 0.90947 1.24179 1.01209 0.99429 0.97118 1.23129 0.97065 0.90481 0.92224 0.87982 1.60409 1.04634 1.14743 1.49868 1.19604 0.96844 0.89023 0.87961 1.21178 0.98328 1.12132 1.23462 0.92010 1.24984 0.96013 0.97700 0.95888 1.69957 1.24411 1.31206 1.28324 0.86552 0.82568 0.80270 0.77930 1.20193 1.21408 1.20302 1.23649 0.83997 0.93797 0.97146 0.90824 1.87930 1.24529 1.93592 1.20315 1.22779 1.02079 0.99659 0.81932 0.91876 0.91276 0.91672 0.93637 0.93408 0.89075 0.91290 0.84687 0.99611 0.95544 0.92942 0.94926 0.93804 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.63 6.50 37.16 0.24 0.87 16 3 O -0.36 -5.28 10.27 -35.23 -0.36 -5.64 16 4 C 0.04 0.66 4.21 -25.82 -0.11 0.55 16 5 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 6 C -0.18 -2.96 7.49 -25.82 -0.19 -3.15 16 7 C 0.08 1.60 4.05 -66.90 -0.27 1.33 16 8 H 0.10 2.07 7.88 -51.93 -0.41 1.66 16 9 N -0.67 -15.19 6.17 -107.13 -0.66 -15.85 16 10 C 0.19 5.23 5.29 -4.97 -0.03 5.21 16 11 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 15 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.07 1.22 4.14 -25.92 -0.11 1.11 16 20 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 21 O -0.35 -5.70 10.20 -35.23 -0.36 -6.06 16 22 C 0.03 0.41 10.85 101.05 1.10 1.50 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.47 7.83 -51.93 -0.41 1.07 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.34 7.46 8.20 -39.29 -0.32 7.13 16 31 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 32 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -31.54 303.68 -6.65 -38.19 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.15 Total: 1.75 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 0.60 Total: -7.37 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.08 Total: -42.60 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.72 Total: -11.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.54 -6.65 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252760264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.602 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds