Wall clock time and date at job start Sun Mar 29 2020 21:29:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42909 * 109.46957 * 2 1
4 4 C 1.42893 * 113.99788 * 180.02562 * 3 2 1
5 5 H 1.09003 * 112.85485 * 18.80060 * 4 3 2
6 6 C 1.53964 * 113.61264 * 247.53496 * 4 3 2
7 7 C 1.53780 * 87.01928 * 270.79921 * 6 4 3
8 8 H 1.09002 * 113.61338 * 89.22322 * 7 6 4
9 9 N 1.46895 * 113.61626 * 220.04831 * 7 6 4
10 10 C 1.46904 * 111.00014 * 254.13897 * 9 7 6
11 11 C 1.50701 * 109.47195 * 180.02562 * 10 9 7
12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9
13 13 C 1.37871 * 119.99694 * 180.27796 * 11 10 9
14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10
15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10
16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11
17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11
18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11
19 19 C 1.53782 * 113.61518 * 150.00450 * 4 3 2
20 20 H 1.08994 * 113.68920 * 334.63790 * 19 4 3
21 21 O 1.42907 * 113.61495 * 203.74761 * 19 4 3
22 22 C 1.42902 * 113.99928 * 112.49971 * 21 19 4
23 23 H 1.09002 * 109.47178 * 59.99552 * 1 2 3
24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.46702 * 299.99813 * 1 2 3
26 26 H 1.09003 * 109.47384 * 240.00496 * 2 1 3
27 27 H 1.08994 * 109.47379 * 119.99847 * 2 1 3
28 28 H 1.09002 * 113.61161 * 156.27951 * 6 4 3
29 29 H 1.08997 * 113.66443 * 25.32797 * 6 4 3
30 30 H 1.00901 * 110.99972 * 18.08901 * 9 7 6
31 31 H 1.09000 * 109.47038 * 59.99386 * 10 9 7
32 32 H 1.09007 * 109.46566 * 299.99918 * 10 9 7
33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11
34 34 H 1.08999 * 109.46829 * 299.99696 * 22 21 19
35 35 H 1.08996 * 109.46726 * 60.00108 * 22 21 19
36 36 H 1.08998 * 109.46619 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4308 1.4602 -0.0006
5 1 3.9278 0.5458 -0.3246
6 6 4.0036 2.0461 1.3029
7 6 3.8417 3.4321 0.6567
8 1 2.8678 3.8870 0.8373
9 7 4.9583 4.3451 0.9348
10 6 4.5691 5.3704 1.9122
11 6 5.7371 6.2867 2.1712
12 1 6.6750 6.1234 1.6611
13 6 5.6104 7.3296 3.0640
14 7 4.4684 7.5283 3.6854
15 14 7.0606 8.4606 3.3910
16 1 7.4695 9.1201 2.1247
17 1 6.6686 9.4942 4.3826
18 1 8.1966 7.6673 3.9252
19 6 3.9483 2.7254 -0.7050
20 1 3.2638 3.1194 -1.4562
21 8 5.2892 2.6059 -1.1845
22 6 5.3992 2.6069 -2.6093
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 5.0415 1.7687 1.4872
29 1 3.3625 1.8914 2.1708
30 1 5.7715 3.8367 1.2485
31 1 4.2703 4.8896 2.8436
32 1 3.7339 5.9495 1.5180
33 1 4.3794 8.2618 4.3138
34 1 4.8356 1.7682 -3.0178
35 1 4.9986 3.5406 -3.0039
36 1 6.4476 2.5132 -2.8927
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252760264.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:29:34
Heat of formation + Delta-G solvation = -66.788470 kcal
Electronic energy + Delta-G solvation = -16274.359688 eV
Core-core repulsion = 13566.749743 eV
Total energy + Delta-G solvation = -2707.609945 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.75648 -37.19484 -35.59855 -33.45235 -31.74233 -30.57733 -26.62396 -26.42294
-24.58003 -23.22820 -22.86193 -21.30954 -19.45175 -16.83473 -16.52899 -15.87484
-15.59162 -15.53910 -14.84306 -14.52926 -13.76275 -13.68430 -13.59351 -13.02634
-12.61877 -12.38560 -12.27329 -11.70866 -11.67170 -11.31093 -11.26322 -11.12335
-10.78277 -10.62606 -10.47284 -10.20255 -9.94381 -9.47692 -9.17005 -8.91178
-8.41056 -7.09691 -5.96206 -3.97769 3.35672 3.38427 3.41666 3.45354
4.24724 4.49017 4.77908 4.85562 4.98185 5.08265 5.17106 5.21696
5.26675 5.39377 5.43938 5.51859 5.56276 5.69897 5.78241 5.80693
5.82481 5.89124 5.99227 6.22377 6.46377 6.51208 7.17695 7.33689
7.52984 7.57351 7.87889 8.22051 8.54373 8.73247 9.12234 9.66813
11.14883
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.032248 B = 0.005611 C = 0.004954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.052408 B = 4988.835510 C = 5650.965642
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.058 3.942
3 O -0.364 6.364
4 C 0.045 3.955
5 H 0.073 0.927
6 C -0.180 4.180
7 C 0.084 3.916
8 H 0.102 0.898
9 N -0.668 5.668
10 C 0.192 3.808
11 C -0.512 4.512
12 H 0.062 0.938
13 C 0.055 3.945
14 N -0.899 5.899
15 Si 0.899 3.101
16 H -0.276 1.276
17 H -0.288 1.288
18 H -0.277 1.277
19 C 0.074 3.926
20 H 0.074 0.926
21 O -0.346 6.346
22 C 0.032 3.968
23 H 0.062 0.938
24 H 0.068 0.932
25 H 0.064 0.936
26 H 0.045 0.955
27 H 0.048 0.952
28 H 0.091 0.909
29 H 0.068 0.932
30 H 0.335 0.665
31 H -0.014 1.014
32 H 0.026 0.974
33 H 0.261 0.739
34 H 0.032 0.968
35 H 0.043 0.957
36 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.252 -15.038 -9.140 18.104
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.019 4.019
3 O -0.283 6.283
4 C -0.014 4.014
5 H 0.091 0.909
6 C -0.219 4.219
7 C -0.029 4.029
8 H 0.120 0.880
9 N -0.297 5.297
10 C 0.066 3.934
11 C -0.551 4.551
12 H 0.080 0.920
13 C -0.146 4.146
14 N -0.539 5.539
15 Si 0.727 3.273
16 H -0.202 1.202
17 H -0.214 1.214
18 H -0.203 1.203
19 C 0.014 3.986
20 H 0.092 0.908
21 O -0.264 6.264
22 C -0.064 4.064
23 H 0.081 0.919
24 H 0.087 0.913
25 H 0.083 0.917
26 H 0.064 0.936
27 H 0.066 0.934
28 H 0.109 0.891
29 H 0.087 0.913
30 H 0.153 0.847
31 H 0.004 0.996
32 H 0.045 0.955
33 H 0.071 0.929
34 H 0.051 0.949
35 H 0.062 0.938
36 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -4.417 -14.331 -9.421 17.710
hybrid contribution 0.599 -0.146 0.855 1.054
sum -3.818 -14.477 -8.566 17.249
Atomic orbital electron populations
1.21746 0.93799 1.02030 1.03293 1.22508 0.95459 0.84066 0.99876
1.87873 1.19767 1.26029 1.94636 1.23615 0.81055 0.98492 0.98266
0.90947 1.24179 1.01209 0.99429 0.97118 1.23129 0.97065 0.90481
0.92224 0.87982 1.60409 1.04634 1.14743 1.49868 1.19604 0.96844
0.89023 0.87961 1.21178 0.98328 1.12132 1.23462 0.92010 1.24984
0.96013 0.97700 0.95888 1.69957 1.24411 1.31206 1.28324 0.86552
0.82568 0.80270 0.77930 1.20193 1.21408 1.20302 1.23649 0.83997
0.93797 0.97146 0.90824 1.87930 1.24529 1.93592 1.20315 1.22779
1.02079 0.99659 0.81932 0.91876 0.91276 0.91672 0.93637 0.93408
0.89075 0.91290 0.84687 0.99611 0.95544 0.92942 0.94926 0.93804
0.89845
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16
2 C 0.06 0.63 6.50 37.16 0.24 0.87 16
3 O -0.36 -5.28 10.27 -35.23 -0.36 -5.64 16
4 C 0.04 0.66 4.21 -25.82 -0.11 0.55 16
5 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16
6 C -0.18 -2.96 7.49 -25.82 -0.19 -3.15 16
7 C 0.08 1.60 4.05 -66.90 -0.27 1.33 16
8 H 0.10 2.07 7.88 -51.93 -0.41 1.66 16
9 N -0.67 -15.19 6.17 -107.13 -0.66 -15.85 16
10 C 0.19 5.23 5.29 -4.97 -0.03 5.21 16
11 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16
12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16
13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
14 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16
15 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16
16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 C 0.07 1.22 4.14 -25.92 -0.11 1.11 16
20 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16
21 O -0.35 -5.70 10.20 -35.23 -0.36 -6.06 16
22 C 0.03 0.41 10.85 101.05 1.10 1.50 16
23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
28 H 0.09 1.47 7.83 -51.93 -0.41 1.07 16
29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
30 H 0.34 7.46 8.20 -39.29 -0.32 7.13 16
31 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16
32 H 0.03 0.77 8.13 -51.93 -0.42 0.35 16
33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16
35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16
LS Contribution 303.68 15.07 4.58 4.58
Total: -1.00 -31.54 303.68 -6.65 -38.19
By element:
Atomic # 1 Polarization: 7.90 SS G_CDS: -6.15 Total: 1.75 kcal
Atomic # 6 Polarization: -7.96 SS G_CDS: 0.60 Total: -7.37 kcal
Atomic # 7 Polarization: -42.68 SS G_CDS: 0.08 Total: -42.60 kcal
Atomic # 8 Polarization: -10.98 SS G_CDS: -0.72 Total: -11.70 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 4.58 Total: 4.58 kcal
Total: -31.54 -6.65 -38.19 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252760264.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.602 kcal
(2) G-P(sol) polarization free energy of solvation -31.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds