Wall clock time and date at job start Sun Mar 29 2020 21:29:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42909 * 109.46957 * 2 1
4 4 C 1.42893 * 113.99788 * 180.02562 * 3 2 1
5 5 H 1.09003 * 112.85485 * 18.80060 * 4 3 2
6 6 C 1.53964 * 113.61264 * 247.53496 * 4 3 2
7 7 C 1.53780 * 87.01928 * 270.79921 * 6 4 3
8 8 H 1.09002 * 113.61338 * 89.22322 * 7 6 4
9 9 N 1.46895 * 113.61626 * 220.04831 * 7 6 4
10 10 C 1.46904 * 111.00014 * 254.13897 * 9 7 6
11 11 C 1.50701 * 109.47195 * 180.02562 * 10 9 7
12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9
13 13 C 1.37871 * 119.99694 * 180.27796 * 11 10 9
14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10
15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10
16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11
17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11
18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11
19 19 C 1.53782 * 113.61518 * 150.00450 * 4 3 2
20 20 H 1.08994 * 113.68920 * 334.63790 * 19 4 3
21 21 O 1.42907 * 113.61495 * 203.74761 * 19 4 3
22 22 C 1.42902 * 113.99928 * 112.49971 * 21 19 4
23 23 H 1.09002 * 109.47178 * 59.99552 * 1 2 3
24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3
25 25 H 1.09002 * 109.46702 * 299.99813 * 1 2 3
26 26 H 1.09003 * 109.47384 * 240.00496 * 2 1 3
27 27 H 1.08994 * 109.47379 * 119.99847 * 2 1 3
28 28 H 1.09002 * 113.61161 * 156.27951 * 6 4 3
29 29 H 1.08997 * 113.66443 * 25.32797 * 6 4 3
30 30 H 1.00901 * 110.99972 * 18.08901 * 9 7 6
31 31 H 1.09000 * 109.47038 * 59.99386 * 10 9 7
32 32 H 1.09007 * 109.46566 * 299.99918 * 10 9 7
33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11
34 34 H 1.08999 * 109.46829 * 299.99696 * 22 21 19
35 35 H 1.08996 * 109.46726 * 60.00108 * 22 21 19
36 36 H 1.08998 * 109.46619 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.4308 1.4602 -0.0006
5 1 3.9278 0.5458 -0.3246
6 6 4.0036 2.0461 1.3029
7 6 3.8417 3.4321 0.6567
8 1 2.8678 3.8870 0.8373
9 7 4.9583 4.3451 0.9348
10 6 4.5691 5.3704 1.9122
11 6 5.7371 6.2867 2.1712
12 1 6.6750 6.1234 1.6611
13 6 5.6104 7.3296 3.0640
14 7 4.4684 7.5283 3.6854
15 14 7.0606 8.4606 3.3910
16 1 7.4695 9.1201 2.1247
17 1 6.6686 9.4942 4.3826
18 1 8.1966 7.6673 3.9252
19 6 3.9483 2.7254 -0.7050
20 1 3.2638 3.1194 -1.4562
21 8 5.2892 2.6059 -1.1845
22 6 5.3992 2.6069 -2.6093
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8934 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8899
28 1 5.0415 1.7687 1.4872
29 1 3.3625 1.8914 2.1708
30 1 5.7715 3.8367 1.2485
31 1 4.2703 4.8896 2.8436
32 1 3.7339 5.9495 1.5180
33 1 4.3794 8.2618 4.3138
34 1 4.8356 1.7682 -3.0178
35 1 4.9986 3.5406 -3.0039
36 1 6.4476 2.5132 -2.8927
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252760264.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:29:34
Heat of formation + Delta-G solvation = -89.995797 kcal
Electronic energy + Delta-G solvation = -16275.366033 eV
Core-core repulsion = 13566.749743 eV
Total energy + Delta-G solvation = -2708.616290 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 229.146 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.04790 -38.30113 -37.07650 -35.33596 -33.56058 -31.61914 -28.49520 -27.68488
-25.84869 -24.89292 -23.69780 -23.28026 -20.79316 -18.62688 -17.95163 -17.15807
-16.99126 -16.67335 -16.46889 -15.93563 -15.39563 -15.17409 -14.71069 -14.45901
-14.05296 -13.81547 -13.51975 -13.24799 -13.03639 -12.76438 -12.67733 -12.53641
-12.27360 -12.24124 -11.99182 -11.66954 -11.56389 -11.27532 -10.64838 -10.61400
-10.21616 -8.96429 -8.20961 -6.32763 1.41436 1.45799 1.53778 2.27759
2.41396 3.10716 3.12490 3.45715 3.62369 3.68307 3.94851 4.18791
4.20476 4.26766 4.40583 4.45090 4.49558 4.58227 4.65401 4.79021
4.87522 4.88875 5.02925 5.03758 5.07420 5.15446 5.27436 5.31557
5.62828 6.02720 6.13615 6.39513 6.54935 6.75988 6.92444 7.38360
8.90492
Molecular weight = 229.15amu
Principal moments of inertia in cm(-1)
A = 0.032248 B = 0.005611 C = 0.004954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 868.052408 B = 4988.835510 C = 5650.965642
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.048 3.952
3 O -0.385 6.385
4 C 0.066 3.934
5 H 0.098 0.902
6 C -0.174 4.174
7 C 0.061 3.939
8 H 0.081 0.919
9 N -0.666 5.666
10 C 0.209 3.791
11 C -0.536 4.536
12 H 0.064 0.936
13 C 0.001 3.999
14 N -0.935 5.935
15 Si 0.975 3.025
16 H -0.268 1.268
17 H -0.282 1.282
18 H -0.265 1.265
19 C 0.083 3.917
20 H 0.076 0.924
21 O -0.367 6.367
22 C 0.026 3.974
23 H 0.060 0.940
24 H 0.095 0.905
25 H 0.053 0.947
26 H 0.065 0.935
27 H 0.055 0.945
28 H 0.096 0.904
29 H 0.064 0.936
30 H 0.338 0.662
31 H -0.041 1.041
32 H -0.004 1.004
33 H 0.265 0.735
34 H 0.055 0.945
35 H 0.039 0.961
36 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.286 -16.219 -10.067 19.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.028 4.028
3 O -0.305 6.305
4 C 0.007 3.993
5 H 0.116 0.884
6 C -0.213 4.213
7 C -0.050 4.050
8 H 0.099 0.901
9 N -0.295 5.295
10 C 0.082 3.918
11 C -0.575 4.575
12 H 0.082 0.918
13 C -0.197 4.197
14 N -0.576 5.576
15 Si 0.799 3.201
16 H -0.193 1.193
17 H -0.207 1.207
18 H -0.190 1.190
19 C 0.023 3.977
20 H 0.094 0.906
21 O -0.285 6.285
22 C -0.070 4.070
23 H 0.079 0.921
24 H 0.114 0.886
25 H 0.072 0.928
26 H 0.083 0.917
27 H 0.073 0.927
28 H 0.115 0.885
29 H 0.082 0.918
30 H 0.156 0.844
31 H -0.023 1.023
32 H 0.014 0.986
33 H 0.074 0.926
34 H 0.074 0.926
35 H 0.058 0.942
36 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -3.461 -15.546 -10.372 19.006
hybrid contribution 0.228 0.173 1.104 1.140
sum -3.234 -15.373 -9.268 18.239
Atomic orbital electron populations
1.21777 0.92746 1.03551 1.02610 1.22806 0.96390 0.82473 1.01131
1.87866 1.19436 1.28623 1.94578 1.23343 0.81542 0.98541 0.95880
0.88377 1.24097 1.01706 0.97457 0.98041 1.23304 0.94900 0.91134
0.95705 0.90086 1.60332 1.05938 1.15245 1.47970 1.19227 0.95432
0.89665 0.87525 1.21522 0.98810 1.13051 1.24076 0.91810 1.25980
0.99168 0.99289 0.95283 1.70094 1.26733 1.31950 1.28779 0.85352
0.78704 0.77929 0.78086 1.19322 1.20681 1.19013 1.23437 0.84524
0.94176 0.95531 0.90571 1.87886 1.24184 1.93694 1.22737 1.23004
1.03688 1.00469 0.79845 0.92106 0.88646 0.92823 0.91723 0.92710
0.88529 0.91768 0.84394 1.02310 0.98633 0.92608 0.92595 0.94223
0.88119
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16
2 C 0.05 0.93 6.50 71.98 0.47 1.40 16
3 O -0.39 -10.67 10.27 -148.98 -1.53 -12.20 16
4 C 0.07 1.83 4.21 31.18 0.13 1.96 16
5 H 0.10 2.26 7.87 -2.39 -0.02 2.24 16
6 C -0.17 -5.67 7.49 31.18 0.23 -5.43 16
7 C 0.06 2.40 4.05 45.44 0.18 2.59 16
8 H 0.08 3.48 7.88 -2.39 -0.02 3.46 16
9 N -0.67 -31.15 6.17 -492.84 -3.04 -34.19 16
10 C 0.21 11.91 5.29 85.56 0.45 12.36 16
11 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16
12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16
13 C 0.00 0.05 5.46 84.65 0.46 0.51 16
14 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16
15 Si 0.98 45.47 29.54 68.60 2.03 47.50 16
16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16
17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
19 C 0.08 2.67 4.14 31.12 0.13 2.80 16
20 H 0.08 2.37 7.87 -2.39 -0.02 2.35 16
21 O -0.37 -11.53 10.20 -148.98 -1.52 -13.05 16
22 C 0.03 0.59 10.85 113.37 1.23 1.82 16
23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
28 H 0.10 3.05 7.83 -2.39 -0.02 3.03 16
29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16
30 H 0.34 15.29 8.20 -89.69 -0.74 14.55 16
31 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16
32 H 0.00 -0.28 8.13 -2.38 -0.02 -0.30 16
33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16
36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16
Total: -1.00 -68.55 303.68 0.79 -67.76
By element:
Atomic # 1 Polarization: 17.32 SS G_CDS: 0.30 Total: 17.62 kcal
Atomic # 6 Polarization: -19.71 SS G_CDS: 4.27 Total: -15.44 kcal
Atomic # 7 Polarization: -89.42 SS G_CDS: -2.76 Total: -92.18 kcal
Atomic # 8 Polarization: -22.20 SS G_CDS: -3.05 Total: -25.25 kcal
Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal
Total: -68.55 0.79 -67.76 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252760264.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.238 kcal
(2) G-P(sol) polarization free energy of solvation -68.548 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.996 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds