Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42909 * 109.46957 * 2 1 4 4 C 1.42893 * 113.99788 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.85485 * 18.80060 * 4 3 2 6 6 C 1.53964 * 113.61264 * 247.53496 * 4 3 2 7 7 C 1.53780 * 87.01928 * 270.79921 * 6 4 3 8 8 H 1.09002 * 113.61338 * 89.22322 * 7 6 4 9 9 N 1.46895 * 113.61626 * 220.04831 * 7 6 4 10 10 C 1.46904 * 111.00014 * 254.13897 * 9 7 6 11 11 C 1.50701 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27796 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 C 1.53782 * 113.61518 * 150.00450 * 4 3 2 20 20 H 1.08994 * 113.68920 * 334.63790 * 19 4 3 21 21 O 1.42907 * 113.61495 * 203.74761 * 19 4 3 22 22 C 1.42902 * 113.99928 * 112.49971 * 21 19 4 23 23 H 1.09002 * 109.47178 * 59.99552 * 1 2 3 24 24 H 1.08993 * 109.47069 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46702 * 299.99813 * 1 2 3 26 26 H 1.09003 * 109.47384 * 240.00496 * 2 1 3 27 27 H 1.08994 * 109.47379 * 119.99847 * 2 1 3 28 28 H 1.09002 * 113.61161 * 156.27951 * 6 4 3 29 29 H 1.08997 * 113.66443 * 25.32797 * 6 4 3 30 30 H 1.00901 * 110.99972 * 18.08901 * 9 7 6 31 31 H 1.09000 * 109.47038 * 59.99386 * 10 9 7 32 32 H 1.09007 * 109.46566 * 299.99918 * 10 9 7 33 33 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.46829 * 299.99696 * 22 21 19 35 35 H 1.08996 * 109.46726 * 60.00108 * 22 21 19 36 36 H 1.08998 * 109.46619 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9278 0.5458 -0.3246 6 6 4.0036 2.0461 1.3029 7 6 3.8417 3.4321 0.6567 8 1 2.8678 3.8870 0.8373 9 7 4.9583 4.3451 0.9348 10 6 4.5691 5.3704 1.9122 11 6 5.7371 6.2867 2.1712 12 1 6.6750 6.1234 1.6611 13 6 5.6104 7.3296 3.0640 14 7 4.4684 7.5283 3.6854 15 14 7.0606 8.4606 3.3910 16 1 7.4695 9.1201 2.1247 17 1 6.6686 9.4942 4.3826 18 1 8.1966 7.6673 3.9252 19 6 3.9483 2.7254 -0.7050 20 1 3.2638 3.1194 -1.4562 21 8 5.2892 2.6059 -1.1845 22 6 5.3992 2.6069 -2.6093 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 5.0415 1.7687 1.4872 29 1 3.3625 1.8914 2.1708 30 1 5.7715 3.8367 1.2485 31 1 4.2703 4.8896 2.8436 32 1 3.7339 5.9495 1.5180 33 1 4.3794 8.2618 4.3138 34 1 4.8356 1.7682 -3.0178 35 1 4.9986 3.5406 -3.0039 36 1 6.4476 2.5132 -2.8927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252760264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = -89.995797 kcal Electronic energy + Delta-G solvation = -16275.366033 eV Core-core repulsion = 13566.749743 eV Total energy + Delta-G solvation = -2708.616290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.04790 -38.30113 -37.07650 -35.33596 -33.56058 -31.61914 -28.49520 -27.68488 -25.84869 -24.89292 -23.69780 -23.28026 -20.79316 -18.62688 -17.95163 -17.15807 -16.99126 -16.67335 -16.46889 -15.93563 -15.39563 -15.17409 -14.71069 -14.45901 -14.05296 -13.81547 -13.51975 -13.24799 -13.03639 -12.76438 -12.67733 -12.53641 -12.27360 -12.24124 -11.99182 -11.66954 -11.56389 -11.27532 -10.64838 -10.61400 -10.21616 -8.96429 -8.20961 -6.32763 1.41436 1.45799 1.53778 2.27759 2.41396 3.10716 3.12490 3.45715 3.62369 3.68307 3.94851 4.18791 4.20476 4.26766 4.40583 4.45090 4.49558 4.58227 4.65401 4.79021 4.87522 4.88875 5.02925 5.03758 5.07420 5.15446 5.27436 5.31557 5.62828 6.02720 6.13615 6.39513 6.54935 6.75988 6.92444 7.38360 8.90492 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.032248 B = 0.005611 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.052408 B = 4988.835510 C = 5650.965642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.066 3.934 5 H 0.098 0.902 6 C -0.174 4.174 7 C 0.061 3.939 8 H 0.081 0.919 9 N -0.666 5.666 10 C 0.209 3.791 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.975 3.025 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.083 3.917 20 H 0.076 0.924 21 O -0.367 6.367 22 C 0.026 3.974 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.338 0.662 31 H -0.041 1.041 32 H -0.004 1.004 33 H 0.265 0.735 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 -16.219 -10.067 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.305 6.305 4 C 0.007 3.993 5 H 0.116 0.884 6 C -0.213 4.213 7 C -0.050 4.050 8 H 0.099 0.901 9 N -0.295 5.295 10 C 0.082 3.918 11 C -0.575 4.575 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.190 1.190 19 C 0.023 3.977 20 H 0.094 0.906 21 O -0.285 6.285 22 C -0.070 4.070 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.156 0.844 31 H -0.023 1.023 32 H 0.014 0.986 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.461 -15.546 -10.372 19.006 hybrid contribution 0.228 0.173 1.104 1.140 sum -3.234 -15.373 -9.268 18.239 Atomic orbital electron populations 1.21777 0.92746 1.03551 1.02610 1.22806 0.96390 0.82473 1.01131 1.87866 1.19436 1.28623 1.94578 1.23343 0.81542 0.98541 0.95880 0.88377 1.24097 1.01706 0.97457 0.98041 1.23304 0.94900 0.91134 0.95705 0.90086 1.60332 1.05938 1.15245 1.47970 1.19227 0.95432 0.89665 0.87525 1.21522 0.98810 1.13051 1.24076 0.91810 1.25980 0.99168 0.99289 0.95283 1.70094 1.26733 1.31950 1.28779 0.85352 0.78704 0.77929 0.78086 1.19322 1.20681 1.19013 1.23437 0.84524 0.94176 0.95531 0.90571 1.87886 1.24184 1.93694 1.22737 1.23004 1.03688 1.00469 0.79845 0.92106 0.88646 0.92823 0.91723 0.92710 0.88529 0.91768 0.84394 1.02310 0.98633 0.92608 0.92595 0.94223 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.93 6.50 71.98 0.47 1.40 16 3 O -0.39 -10.67 10.27 -148.98 -1.53 -12.20 16 4 C 0.07 1.83 4.21 31.18 0.13 1.96 16 5 H 0.10 2.26 7.87 -2.39 -0.02 2.24 16 6 C -0.17 -5.67 7.49 31.18 0.23 -5.43 16 7 C 0.06 2.40 4.05 45.44 0.18 2.59 16 8 H 0.08 3.48 7.88 -2.39 -0.02 3.46 16 9 N -0.67 -31.15 6.17 -492.84 -3.04 -34.19 16 10 C 0.21 11.91 5.29 85.56 0.45 12.36 16 11 C -0.54 -31.96 9.32 25.60 0.24 -31.72 16 12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 15 Si 0.98 45.47 29.54 68.60 2.03 47.50 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 C 0.08 2.67 4.14 31.12 0.13 2.80 16 20 H 0.08 2.37 7.87 -2.39 -0.02 2.35 16 21 O -0.37 -11.53 10.20 -148.98 -1.52 -13.05 16 22 C 0.03 0.59 10.85 113.37 1.23 1.82 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 3.05 7.83 -2.39 -0.02 3.03 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.34 15.29 8.20 -89.69 -0.74 14.55 16 31 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 32 H 0.00 -0.28 8.13 -2.38 -0.02 -0.30 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -68.55 303.68 0.79 -67.76 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.30 Total: 17.62 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 4.27 Total: -15.44 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -2.76 Total: -92.18 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -3.05 Total: -25.25 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.55 0.79 -67.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252760264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.238 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds