Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99449 * 179.97438 * 13 11 10 15 15 H 1.08994 * 108.85447 * 327.87725 * 14 13 11 16 16 C 1.52944 * 108.88581 * 209.43343 * 14 13 11 17 17 C 1.55146 * 108.96203 * 209.10812 * 16 14 13 18 18 S 1.83994 * 100.90837 * 41.43956 * 17 16 14 19 19 C 1.53706 * 108.88668 * 86.45855 * 14 13 11 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 24 24 H 0.96992 * 119.99896 * 0.02562 * 13 11 10 25 25 H 1.09000 * 109.60359 * 329.04291 * 16 14 13 26 26 H 1.09002 * 109.60167 * 89.17712 * 16 14 13 27 27 H 1.08999 * 111.13361 * 283.52901 * 17 16 14 28 28 H 1.09005 * 111.16922 * 159.36616 * 17 16 14 29 29 H 1.08997 * 110.34271 * 242.48898 * 19 14 13 30 30 H 1.09008 * 110.34082 * 4.73974 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.1410 -7.2890 0.0027 15 1 1.2001 -7.3294 0.5514 16 6 3.1643 -8.1755 0.7142 17 6 3.0869 -9.6082 0.1241 18 16 2.9101 -9.2371 -1.6693 19 6 1.8900 -7.7292 -1.4484 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 3.1566 -3.4355 0.0009 24 1 3.5830 -5.7306 0.0020 25 1 4.1654 -7.7715 0.5637 26 1 2.9421 -8.2067 1.7809 27 1 2.2156 -10.1426 0.5026 28 1 4.0028 -10.1653 0.3217 29 1 0.8353 -7.9602 -1.5973 30 1 2.2097 -6.9507 -2.1412 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -62.574252 kcal Electronic energy + Delta-G solvation = -13784.603466 eV Core-core repulsion = 11318.670128 eV Total energy + Delta-G solvation = -2465.933337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06110 -37.85783 -36.05730 -34.48748 -33.42861 -30.27921 -28.95659 -25.96567 -24.50404 -21.96925 -21.73205 -19.86517 -18.13935 -17.76420 -17.37874 -16.79878 -16.44026 -15.81271 -15.46220 -14.98662 -14.84109 -14.05473 -14.02000 -13.77756 -13.24856 -13.03192 -12.90113 -12.87585 -12.66777 -12.23059 -11.91165 -11.49256 -11.26892 -11.05763 -10.78819 -10.32668 -9.64672 -8.75396 -8.27707 -6.44210 0.80313 1.31502 1.44329 1.48552 1.56552 1.85485 2.21054 2.40232 3.07423 3.46257 3.51474 3.78719 3.96574 4.02273 4.22183 4.51173 4.65366 4.76772 4.95679 4.99158 5.10534 5.27486 5.48502 5.50173 5.66721 5.85423 6.23090 6.67336 7.24655 7.29476 7.69966 8.84411 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.068621 B = 0.004585 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.937493 B = 6105.784346 C = 6184.301568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.646 6.646 13 N -0.725 5.725 14 C 0.157 3.843 15 H 0.078 0.922 16 C -0.123 4.123 17 C -0.050 4.050 18 S -0.331 6.331 19 C -0.073 4.073 20 H 0.269 0.731 21 H -0.013 1.013 22 H -0.015 1.015 23 H 0.405 0.595 24 H 0.412 0.588 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.084 0.916 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 -16.161 1.763 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.375 5.375 11 C 0.391 3.609 12 O -0.529 6.529 13 N -0.382 5.382 14 C 0.050 3.950 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.197 4.197 18 S -0.106 6.106 19 C -0.222 4.222 20 H 0.078 0.922 21 H 0.005 0.995 22 H 0.003 0.997 23 H 0.241 0.759 24 H 0.249 0.751 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.153 0.847 29 H 0.103 0.897 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.176 -16.782 0.772 19.641 hybrid contribution -0.016 1.693 0.687 1.828 sum 10.160 -15.088 1.459 18.248 Atomic orbital electron populations 1.70135 1.08283 1.28630 1.49908 1.26051 0.95754 1.03840 0.93850 0.85200 0.77888 0.76597 0.79469 1.18757 1.21135 1.18599 1.21575 0.94317 0.90485 1.53002 0.89812 1.18410 0.88101 0.83333 0.93980 1.45304 1.10952 1.03807 1.77469 1.16334 0.85162 0.81636 0.77748 1.90848 1.16657 1.84863 1.60484 1.45091 1.09119 1.03783 1.80229 1.21421 0.99503 0.80650 0.93436 0.90360 1.22566 0.99847 0.92234 1.01515 1.24427 1.07804 0.98947 0.88552 1.87969 1.70151 1.35722 1.16778 1.24404 1.01479 0.96407 0.99958 0.92243 0.99542 0.99721 0.75940 0.75058 0.88177 0.87367 0.87645 0.84652 0.89686 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.99 42.06 29.54 68.60 2.03 44.09 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.56 -30.14 9.28 25.60 0.24 -29.90 16 8 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.29 15.73 5.43 85.63 0.46 16.20 16 10 N -0.72 -30.55 5.55 -482.28 -2.68 -33.23 16 11 C 0.69 27.96 8.54 179.05 1.53 29.49 16 12 O -0.65 -32.63 15.94 -4.00 -0.06 -32.69 16 13 N -0.72 -19.68 4.86 -456.75 -2.22 -21.90 16 14 C 0.16 3.71 2.98 45.21 0.13 3.84 16 15 H 0.08 2.22 7.45 -2.39 -0.02 2.20 16 16 C -0.12 -1.72 5.98 31.31 0.19 -1.53 16 17 C -0.05 -0.63 7.52 72.72 0.55 -0.08 16 18 S -0.33 -7.09 23.23 -56.49 -1.31 -8.40 16 19 C -0.07 -1.84 7.11 72.22 0.51 -1.33 16 20 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 21 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 22 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 23 H 0.41 13.99 8.34 -92.71 -0.77 13.22 16 24 H 0.41 8.30 8.36 -92.71 -0.77 7.53 16 25 H 0.10 1.16 7.72 -2.39 -0.02 1.14 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.09 2.53 7.89 -2.38 -0.02 2.51 16 Total: -1.00 -72.59 270.53 -0.28 -72.87 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.39 Total: 17.74 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 4.08 Total: 17.42 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.61 Total: -111.02 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.06 Total: -32.69 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.31 Total: -8.40 kcal Total: -72.59 -0.28 -72.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.294 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds