Wall clock time and date at job start Sun Mar 29 2020 21:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99449 * 179.97438 * 13 11 10 15 15 H 1.08996 * 108.83188 * 34.30216 * 14 13 11 16 16 C 1.52339 * 108.86333 * 152.82891 * 14 13 11 17 17 C 1.54265 * 112.58479 * 120.82000 * 16 14 13 18 18 S 1.83958 * 102.57974 * 24.52752 * 17 16 14 19 19 C 1.54259 * 108.87096 * 275.76728 * 14 13 11 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 24 24 H 0.96992 * 119.99896 * 0.02562 * 13 11 10 25 25 H 1.08997 * 108.86649 * 241.63530 * 16 14 13 26 26 H 1.08994 * 108.86855 * 0.02562 * 16 14 13 27 27 H 1.08996 * 110.78818 * 142.80201 * 17 16 14 28 28 H 1.09003 * 110.78439 * 266.25500 * 17 16 14 29 29 H 1.09002 * 110.78700 * 332.93120 * 19 14 13 30 30 H 1.08999 * 110.78292 * 96.38248 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.1410 -7.2890 0.0027 15 1 1.2201 -7.3370 -0.5784 16 6 3.1857 -8.1815 -0.6552 17 6 3.6908 -9.2950 0.2854 18 16 2.2912 -9.4899 1.4633 19 6 1.8367 -7.7094 1.4554 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 3.1566 -3.4355 0.0009 24 1 3.5830 -5.7306 0.0020 25 1 2.7490 -8.6405 -1.5421 26 1 4.0327 -7.5669 -0.9600 27 1 3.8634 -10.2189 -0.2665 28 1 4.5945 -8.9801 0.8072 29 1 2.4540 -7.1491 2.1576 30 1 0.7782 -7.5813 1.6815 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872447.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:26 Heat of formation + Delta-G solvation = -62.055974 kcal Electronic energy + Delta-G solvation = -13791.440345 eV Core-core repulsion = 11325.529482 eV Total energy + Delta-G solvation = -2465.910863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.083 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05357 -37.87104 -36.05514 -34.47881 -33.38524 -30.30917 -28.95857 -26.09914 -24.56376 -22.00865 -21.54524 -19.90167 -18.15561 -17.90088 -17.09529 -16.70121 -16.46315 -15.86808 -15.40588 -15.01517 -14.90566 -14.23924 -14.02533 -13.96610 -13.12987 -12.90435 -12.88773 -12.71153 -12.61806 -12.21809 -12.02740 -11.46706 -11.24940 -11.12784 -10.79650 -10.28333 -9.62774 -8.79573 -8.27661 -6.44088 0.80184 1.28333 1.44601 1.47168 1.58136 1.89962 2.22093 2.40467 3.07672 3.46936 3.53417 3.77560 3.89016 4.12509 4.17014 4.54710 4.66681 4.81305 4.86798 5.07170 5.10935 5.27856 5.49077 5.51450 5.67433 5.85826 6.24405 6.67930 7.25231 7.30981 7.71467 8.84723 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.070484 B = 0.004595 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.159298 B = 6091.544284 C = 6250.960697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.690 3.310 12 O -0.647 6.647 13 N -0.725 5.725 14 C 0.162 3.838 15 H 0.074 0.926 16 C -0.126 4.126 17 C -0.047 4.047 18 S -0.336 6.336 19 C -0.069 4.069 20 H 0.269 0.731 21 H -0.015 1.015 22 H -0.015 1.015 23 H 0.406 0.594 24 H 0.413 0.587 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.785 -15.316 -0.742 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.375 5.375 11 C 0.390 3.610 12 O -0.529 6.529 13 N -0.384 5.384 14 C 0.054 3.946 15 H 0.092 0.908 16 C -0.165 4.165 17 C -0.195 4.195 18 S -0.111 6.111 19 C -0.218 4.218 20 H 0.077 0.923 21 H 0.003 0.997 22 H 0.003 0.997 23 H 0.241 0.759 24 H 0.251 0.749 25 H 0.116 0.884 26 H 0.127 0.873 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.091 -16.367 -0.164 19.772 hybrid contribution 0.731 2.044 -0.359 2.201 sum 11.821 -14.323 -0.523 18.579 Atomic orbital electron populations 1.70144 1.08316 1.28554 1.50011 1.26060 0.95748 1.03877 0.93886 0.85143 0.78467 0.76929 0.78573 1.19600 1.21086 1.17877 1.21605 0.94339 0.90439 1.52829 0.89729 1.18411 0.88133 0.83396 0.93951 1.45292 1.10934 1.03777 1.77492 1.16369 0.85200 0.81674 0.77748 1.90854 1.16785 1.84879 1.60410 1.45228 1.09068 1.03806 1.80257 1.21501 0.98920 0.80270 0.93881 0.90774 1.22184 0.98759 0.96213 0.99325 1.24284 0.96535 1.02624 0.96036 1.88171 1.44265 1.13964 1.64701 1.24564 1.04723 0.92467 1.00068 0.92267 0.99710 0.99661 0.75895 0.74928 0.88362 0.87263 0.85242 0.87215 0.88716 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 41.90 29.54 68.60 2.03 43.93 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.55 -29.88 9.28 25.60 0.24 -29.64 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.28 15.64 5.43 85.63 0.46 16.11 16 10 N -0.72 -30.18 5.55 -482.28 -2.68 -32.86 16 11 C 0.69 27.71 8.51 179.05 1.52 29.23 16 12 O -0.65 -32.82 15.98 -4.00 -0.06 -32.89 16 13 N -0.72 -19.08 4.93 -456.80 -2.25 -21.33 16 14 C 0.16 3.85 2.94 45.20 0.13 3.98 16 15 H 0.07 2.22 7.52 -2.39 -0.02 2.20 16 16 C -0.13 -1.74 6.09 30.80 0.19 -1.56 16 17 C -0.05 -0.58 7.46 72.41 0.54 -0.04 16 18 S -0.34 -7.39 23.26 -56.49 -1.31 -8.71 16 19 C -0.07 -1.74 7.04 72.41 0.51 -1.23 16 20 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 22 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 23 H 0.41 13.68 8.34 -92.71 -0.77 12.90 16 24 H 0.41 7.56 8.24 -92.71 -0.76 6.80 16 25 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.11 1.05 7.44 -2.39 -0.02 1.03 16 27 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -73.37 270.41 -0.32 -73.69 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.38 Total: 16.53 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 4.06 Total: 17.53 kcal Atomic # 7 Polarization: -105.44 SS G_CDS: -4.64 Total: -110.09 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.06 Total: -32.89 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: -7.39 SS G_CDS: -1.31 Total: -8.71 kcal Total: -73.37 -0.32 -73.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872447.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.629 kcal (2) G-P(sol) polarization free energy of solvation -73.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds