Wall clock time and date at job start Sun Mar 29 2020 21:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38556 * 119.87338 * 2 1 4 4 C 1.38784 * 120.50880 * 180.02562 * 3 2 1 5 5 Cl 1.73598 * 119.87077 * 179.97438 * 4 3 2 6 6 C 1.37712 * 120.25532 * 359.97438 * 4 3 2 7 7 C 1.40681 * 119.74873 * 0.02670 * 6 4 3 8 8 C 1.41340 * 120.24657 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00474 * 154.26190 * 8 7 6 10 10 C 1.39945 * 119.99939 * 334.25559 * 8 7 6 11 11 N 1.30837 * 119.99684 * 343.40203 * 10 8 7 12 12 Si 1.86799 * 119.99893 * 163.39894 * 10 8 7 13 13 H 1.48502 * 109.47309 * 60.00092 * 12 10 8 14 14 H 1.48504 * 109.47001 * 180.02562 * 12 10 8 15 15 H 1.48493 * 109.47221 * 300.00113 * 12 10 8 16 16 C 1.37772 * 119.87913 * 180.02562 * 2 1 3 17 17 Cl 1.73603 * 120.13300 * 0.02562 * 16 2 1 18 18 H 1.09007 * 109.47132 * 90.00203 * 1 2 3 19 19 H 1.09005 * 109.46947 * 209.99523 * 1 2 3 20 20 H 1.08994 * 109.47310 * 330.00172 * 1 2 3 21 21 H 1.08007 * 119.74874 * 359.72226 * 3 2 1 22 22 H 1.07998 * 120.12206 * 180.02562 * 6 4 3 23 23 H 0.97003 * 119.99546 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2015 0.0000 4 6 3.5849 1.2168 -0.0005 5 17 4.4328 2.7317 -0.0012 6 6 4.2919 0.0351 -0.0005 7 6 3.6022 -1.1910 -0.0006 8 6 4.3172 -2.4102 0.0000 9 1 3.8636 -3.3022 0.4061 10 6 5.6131 -2.4616 -0.5259 11 7 6.0438 -1.4982 -1.2994 12 14 6.7278 -3.9055 -0.1235 13 1 6.0982 -5.1641 -0.5975 14 1 8.0381 -3.7223 -0.7980 15 1 6.9336 -3.9776 1.3453 16 6 2.1934 -1.1946 -0.0005 17 17 1.3257 -2.6982 -0.0019 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8901 0.5138 20 1 -0.3633 0.8899 0.5138 21 1 1.6510 2.1332 -0.0045 22 1 5.3718 0.0496 -0.0005 23 1 6.9419 -1.5340 -1.6642 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263624314.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:15 Heat of formation + Delta-G solvation = -29.148358 kcal Electronic energy + Delta-G solvation = -11625.409480 eV Core-core repulsion = 9295.632116 eV Total energy + Delta-G solvation = -2329.777364 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.77253 -37.33444 -36.68870 -35.87294 -32.97283 -31.42411 -27.59038 -27.24474 -22.78791 -22.20993 -19.00119 -17.51996 -16.82412 -16.24949 -15.94898 -14.82970 -14.66474 -14.08642 -13.57138 -13.37607 -13.28839 -13.04053 -12.82048 -12.67928 -12.37976 -12.07404 -11.88670 -11.63350 -11.45395 -11.05748 -11.01788 -9.42102 -9.09201 -8.71924 -6.46084 0.63487 0.83533 1.38934 1.43094 1.49017 1.51704 1.86114 2.18076 2.57609 3.44712 4.22473 4.44164 4.64169 4.88543 4.91262 5.04556 5.12409 5.22029 5.35492 5.64157 5.82416 5.84986 6.07629 6.40955 6.73435 6.76909 8.22532 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.013076 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.114636 B = 2140.737210 C = 3437.881479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.043 4.043 3 C -0.231 4.231 4 C -0.005 4.005 5 Cl -0.096 7.096 6 C -0.178 4.178 7 C 0.099 3.901 8 C -0.471 4.471 9 H 0.088 0.912 10 C 0.039 3.961 11 N -0.811 5.811 12 Si 0.980 3.020 13 H -0.259 1.259 14 H -0.267 1.267 15 H -0.259 1.259 16 C -0.156 4.156 17 Cl -0.094 7.094 18 H 0.075 0.925 19 H 0.068 0.932 20 H 0.081 0.919 21 H 0.133 0.867 22 H 0.118 0.882 23 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 1.137 1.691 4.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.044 4.044 3 C -0.251 4.251 4 C -0.032 4.032 5 Cl -0.068 7.068 6 C -0.198 4.198 7 C 0.095 3.905 8 C -0.499 4.499 9 H 0.106 0.894 10 C -0.179 4.179 11 N -0.436 5.436 12 Si 0.800 3.200 13 H -0.183 1.183 14 H -0.191 1.191 15 H -0.183 1.183 16 C -0.183 4.183 17 Cl -0.066 7.066 18 H 0.094 0.906 19 H 0.087 0.913 20 H 0.100 0.900 21 H 0.150 0.850 22 H 0.136 0.864 23 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.342 1.220 1.532 3.874 hybrid contribution 0.759 -0.458 -0.050 0.888 sum -2.584 0.761 1.482 3.074 Atomic orbital electron populations 1.20776 0.89116 1.03319 1.02811 1.19571 0.96998 0.90428 0.97393 1.20325 0.91039 0.97364 1.16351 1.20898 0.92670 0.85448 1.04184 1.98259 1.78642 1.32665 1.97204 1.21080 0.99791 0.89925 1.09008 1.17601 0.89949 0.93797 0.89150 1.19838 0.99134 0.96051 1.34891 0.89379 1.26776 0.99154 1.00156 0.91767 1.69842 1.19128 1.33198 1.21431 0.85265 0.76966 0.77894 0.79844 1.18303 1.19076 1.18289 1.20933 0.91684 0.85431 1.20286 1.98186 1.76163 1.34662 1.97568 0.90623 0.91334 0.89976 0.84959 0.86433 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.27 9.60 71.24 0.68 -2.58 14 2 C -0.04 -1.77 5.87 -19.90 -0.12 -1.88 14 3 C -0.23 -9.56 9.48 22.48 0.21 -9.34 14 4 C -0.01 -0.24 6.31 22.28 0.14 -0.10 14 5 Cl -0.10 -3.75 28.94 -2.72 -0.08 -3.82 14 6 C -0.18 -9.02 8.46 22.74 0.19 -8.82 14 7 C 0.10 5.10 5.57 -21.27 -0.12 4.98 14 8 C -0.47 -24.14 8.51 23.45 0.20 -23.94 14 9 H 0.09 4.40 7.13 -2.91 -0.02 4.38 14 10 C 0.04 1.86 5.16 85.25 0.44 2.30 14 11 N -0.81 -40.66 10.97 21.83 0.24 -40.42 14 12 Si 0.98 36.77 29.59 68.60 2.03 38.80 14 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 14 H -0.27 -9.46 7.11 99.48 0.71 -8.75 14 15 H -0.26 -9.52 7.11 99.48 0.71 -8.82 14 16 C -0.16 -7.26 6.37 22.81 0.15 -7.11 14 17 Cl -0.09 -3.89 25.92 -2.72 -0.07 -3.96 14 18 H 0.08 2.20 8.14 -2.38 -0.02 2.18 14 19 H 0.07 2.11 6.89 -2.38 -0.02 2.10 14 20 H 0.08 2.17 8.08 -2.39 -0.02 2.15 14 21 H 0.13 4.72 8.06 -2.91 -0.02 4.69 14 22 H 0.12 6.27 6.21 -2.91 -0.02 6.25 14 23 H 0.29 13.30 8.30 -92.71 -0.77 12.53 14 Total: -1.00 -53.12 234.88 5.13 -47.98 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.23 Total: 7.94 kcal Atomic # 6 Polarization: -48.29 SS G_CDS: 1.78 Total: -46.51 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.24 Total: -40.42 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 17 Polarization: -7.64 SS G_CDS: -0.15 Total: -7.79 kcal Total: -53.12 5.13 -47.98 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263624314.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.834 kcal (2) G-P(sol) polarization free energy of solvation -53.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds