Wall clock time and date at job start Sun Mar 29 2020 21:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38678 * 119.85156 * 2 1 4 4 C 1.38646 * 120.50922 * 180.02562 * 3 2 1 5 5 Cl 1.73606 * 119.89580 * 179.97438 * 4 3 2 6 6 C 1.37931 * 120.20799 * 359.70222 * 4 3 2 7 7 Cl 1.73592 * 120.15423 * 180.29602 * 6 4 3 8 8 C 1.40817 * 119.69046 * 0.57361 * 6 4 3 9 9 C 1.41344 * 120.24098 * 179.72322 * 8 6 4 10 10 H 1.07998 * 120.00544 * 334.32189 * 9 8 6 11 11 C 1.39941 * 119.99388 * 154.32099 * 9 8 6 12 12 N 1.30834 * 120.00459 * 334.59935 * 11 9 8 13 13 Si 1.86802 * 119.99725 * 154.60197 * 11 9 8 14 14 H 1.48499 * 109.46976 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47140 * 299.99621 * 13 11 9 16 16 H 1.48502 * 109.47138 * 60.00153 * 13 11 9 17 17 C 1.37567 * 119.84815 * 180.02562 * 2 1 3 18 18 H 1.08996 * 109.47792 * 269.97948 * 1 2 3 19 19 H 1.08999 * 109.47516 * 29.97939 * 1 2 3 20 20 H 1.09006 * 109.47501 * 149.97854 * 1 2 3 21 21 H 1.08003 * 119.74737 * 0.02562 * 3 2 1 22 22 H 0.97000 * 119.99770 * 354.18073 * 12 11 9 23 23 H 1.07996 * 120.10860 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.2028 0.0000 4 6 3.5836 1.2187 -0.0005 5 17 4.4316 2.7336 -0.0012 6 6 4.2912 0.0347 0.0051 7 17 6.0270 0.0563 0.0122 8 6 3.5991 -1.1916 -0.0008 9 6 4.3126 -2.4117 -0.0010 10 1 5.3144 -2.4514 -0.4023 11 6 3.7207 -3.5683 0.5189 12 7 2.7775 -3.4720 1.4205 13 14 4.2772 -5.2498 -0.0746 14 1 3.5005 -6.3040 0.6260 15 1 4.0511 -5.3580 -1.5383 16 1 5.7227 -5.4243 0.2173 17 6 2.1916 -1.1932 -0.0005 18 1 -0.3634 -0.0004 1.0276 19 1 -0.3634 0.8901 -0.5135 20 1 -0.3634 -0.8898 -0.5142 21 1 1.6507 2.1343 0.0004 22 1 2.5470 -2.6055 1.7905 23 1 1.6510 -2.1280 -0.0014 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263625286.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:20 Heat of formation + Delta-G solvation = -35.224378 kcal Electronic energy + Delta-G solvation = -11661.332189 eV Core-core repulsion = 9331.291349 eV Total energy + Delta-G solvation = -2330.040840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.996 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.97613 -37.43541 -37.01167 -35.96476 -33.06053 -31.21357 -27.72179 -27.04534 -23.17403 -22.11529 -19.68770 -17.34435 -16.85194 -16.41162 -15.65823 -14.99930 -14.58017 -14.26877 -14.03789 -13.81329 -13.25274 -12.96217 -12.55215 -12.44279 -12.30809 -12.02981 -11.95080 -11.65827 -11.54704 -11.20674 -10.89241 -9.61644 -9.42111 -9.10414 -6.57851 0.50891 0.68100 1.19948 1.52553 1.61237 1.75984 1.81171 2.30343 2.51337 3.27294 4.15744 4.36851 4.55656 4.63922 4.83779 4.86098 5.10561 5.17651 5.37685 5.48387 5.65921 5.83275 5.98653 6.10923 6.54381 6.74186 7.95110 Molecular weight = 230.00amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.011295 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.003790 B = 2478.414532 C = 3389.653380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.042 4.042 3 C -0.237 4.237 4 C 0.017 3.983 5 Cl -0.079 7.079 6 C -0.168 4.168 7 Cl -0.090 7.090 8 C 0.085 3.915 9 C -0.524 4.524 10 H 0.081 0.919 11 C 0.010 3.990 12 N -0.800 5.800 13 Si 1.112 2.888 14 H -0.268 1.268 15 H -0.261 1.261 16 H -0.261 1.261 17 C -0.225 4.225 18 H 0.076 0.924 19 H 0.082 0.918 20 H 0.064 0.936 21 H 0.136 0.864 22 H 0.287 0.713 23 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 3.121 -2.130 4.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.043 4.043 3 C -0.256 4.256 4 C -0.010 4.010 5 Cl -0.050 7.050 6 C -0.196 4.196 7 Cl -0.062 7.062 8 C 0.081 3.919 9 C -0.551 4.551 10 H 0.099 0.901 11 C -0.208 4.208 12 N -0.422 5.422 13 Si 0.929 3.071 14 H -0.193 1.193 15 H -0.186 1.186 16 H -0.185 1.185 17 C -0.245 4.245 18 H 0.095 0.905 19 H 0.101 0.899 20 H 0.083 0.917 21 H 0.154 0.846 22 H 0.100 0.900 23 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.621 1.662 -1.928 3.018 hybrid contribution 0.738 1.969 0.005 2.103 sum -0.883 3.631 -1.923 4.203 Atomic orbital electron populations 1.20747 0.89215 1.03111 1.02762 1.19891 0.97083 0.91794 0.95505 1.20390 0.90255 0.98289 1.16713 1.20664 0.92688 0.84353 1.03302 1.98280 1.78341 1.31426 1.96994 1.20746 0.83141 0.93398 1.22327 1.98204 1.11591 1.98791 1.97618 1.17688 0.92542 0.91562 0.90147 1.20818 1.03629 0.94160 1.36471 0.90052 1.28390 0.91931 1.08479 0.92048 1.70575 1.23179 1.31028 1.17388 0.83053 0.77378 0.69263 0.77393 1.19273 1.18604 1.18532 1.21089 0.92981 0.97359 1.13050 0.90545 0.89914 0.91697 0.84623 0.90002 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 10.00 71.24 0.71 -2.44 14 2 C -0.04 -1.72 5.87 -19.92 -0.12 -1.84 14 3 C -0.24 -9.57 9.48 22.47 0.21 -9.36 14 4 C 0.02 0.75 6.31 22.29 0.14 0.89 14 5 Cl -0.08 -2.97 27.94 -2.72 -0.08 -3.04 14 6 C -0.17 -8.11 6.38 22.83 0.15 -7.96 14 7 Cl -0.09 -4.04 26.59 -2.72 -0.07 -4.11 14 8 C 0.08 4.32 5.30 -21.27 -0.11 4.21 14 9 C -0.52 -26.91 8.45 23.45 0.20 -26.71 14 10 H 0.08 4.17 7.19 -2.91 -0.02 4.15 14 11 C 0.01 0.48 4.94 85.25 0.42 0.90 14 12 N -0.80 -40.51 12.31 21.83 0.27 -40.24 14 13 Si 1.11 41.09 30.00 68.60 2.06 43.14 14 14 H -0.27 -9.67 7.11 99.48 0.71 -8.96 14 15 H -0.26 -9.14 7.11 99.48 0.71 -8.44 14 16 H -0.26 -9.06 7.11 99.48 0.71 -8.35 14 17 C -0.23 -10.75 7.58 22.72 0.17 -10.57 14 18 H 0.08 2.18 8.14 -2.39 -0.02 2.16 14 19 H 0.08 2.13 8.08 -2.39 -0.02 2.11 14 20 H 0.06 1.94 8.08 -2.38 -0.02 1.92 14 21 H 0.14 4.69 8.06 -2.91 -0.02 4.67 14 22 H 0.29 15.13 6.68 -92.71 -0.62 14.51 14 23 H 0.11 5.24 6.49 -2.91 -0.02 5.22 14 Total: -1.00 -53.46 235.21 5.33 -48.13 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.38 Total: 8.99 kcal Atomic # 6 Polarization: -54.65 SS G_CDS: 1.77 Total: -52.87 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.27 Total: -40.24 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.06 Total: 43.14 kcal Atomic # 17 Polarization: -7.00 SS G_CDS: -0.15 Total: -7.15 kcal Total: -53.46 5.33 -48.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263625286.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.905 kcal (2) G-P(sol) polarization free energy of solvation -53.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds