Wall clock time and date at job start Sun Mar 29 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47374 * 2 1 4 4 O 1.42894 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53006 * 109.47068 * 239.99890 * 2 1 3 6 6 H 1.09005 * 109.47025 * 60.00241 * 5 2 1 7 7 C 1.52994 * 109.47323 * 300.00070 * 5 2 1 8 8 S 1.81407 * 109.47020 * 179.97438 * 5 2 1 9 9 C 1.81395 * 102.99923 * 185.00009 * 8 5 2 10 10 C 1.52998 * 109.46949 * 183.26355 * 9 8 5 11 11 C 1.50696 * 115.56140 * 40.06367 * 10 9 8 12 12 H 1.08009 * 119.99710 * 270.77398 * 11 10 9 13 13 C 1.37877 * 120.00306 * 90.77857 * 11 10 9 14 14 N 1.31516 * 119.99912 * 174.06927 * 13 11 10 15 15 Si 1.86802 * 119.99712 * 354.06063 * 13 11 10 16 16 H 1.48503 * 109.46771 * 92.57168 * 15 13 11 17 17 H 1.48502 * 109.46757 * 212.56930 * 15 13 11 18 18 H 1.48494 * 109.47453 * 332.56759 * 15 13 11 19 19 C 1.53004 * 117.49957 * 185.74759 * 10 9 8 20 20 C 1.53002 * 60.03212 * 107.47918 * 19 10 9 21 21 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47033 * 300.00067 * 1 2 3 23 23 H 1.09005 * 109.47001 * 59.99883 * 1 2 3 24 24 H 0.96698 * 114.00747 * 59.99811 * 4 2 1 25 25 H 1.08996 * 109.47093 * 59.99806 * 7 5 2 26 26 H 1.08997 * 109.47306 * 179.97438 * 7 5 2 27 27 H 1.09005 * 109.47210 * 300.00057 * 7 5 2 28 28 H 1.09005 * 109.47044 * 63.26437 * 9 8 5 29 29 H 1.09001 * 109.47496 * 303.26928 * 9 8 5 30 30 H 0.97005 * 119.99620 * 180.02562 * 14 13 11 31 31 H 1.08996 * 117.50229 * 214.98566 * 19 10 9 32 32 H 1.09001 * 117.49863 * 359.97438 * 19 10 9 33 33 H 1.08996 * 117.49575 * 107.50309 * 20 19 10 34 34 H 1.09001 * 117.50210 * 252.52221 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7213 -1.2493 6 1 1.6767 -0.2074 -2.1393 7 6 1.5300 -2.1637 -1.2493 8 16 3.8541 -0.7206 -1.2497 9 6 4.2620 -1.4677 -2.8515 10 6 5.7800 -1.6147 -2.9738 11 6 6.4937 -2.0544 -1.7215 12 1 6.8454 -1.3183 -1.0136 13 6 6.6979 -3.3963 -1.4794 14 7 7.4209 -3.7759 -0.4485 15 14 5.9473 -4.6751 -2.6156 16 1 6.9240 -5.0281 -3.6771 17 1 5.6041 -5.8906 -1.8345 18 1 4.7174 -4.1232 -3.2382 19 6 6.3369 -2.1029 -4.3126 20 6 6.5121 -0.6400 -3.8998 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 0.4400 -2.1637 -1.2493 26 1 1.8930 -2.6774 -2.1395 27 1 1.8933 -2.6776 -0.3593 28 1 3.8929 -0.8297 -3.6545 29 1 3.7948 -2.4498 -2.9239 30 1 7.5648 -4.7201 -0.2784 31 1 7.2195 -2.7420 -4.2877 32 1 5.6218 -2.3197 -5.1062 33 1 7.5099 -0.3169 -3.6032 34 1 5.9119 0.1055 -4.4214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300337252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:04 Heat of formation + Delta-G solvation = -34.564736 kcal Electronic energy + Delta-G solvation = -14562.826777 eV Core-core repulsion = 12201.648366 eV Total energy + Delta-G solvation = -2361.178410 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.94956 -36.93920 -32.81307 -32.01813 -29.41045 -27.85274 -25.32433 -24.83863 -21.63612 -20.61371 -19.04668 -16.91800 -16.18977 -15.68443 -15.19603 -14.83022 -14.36803 -13.93685 -13.77218 -13.12677 -12.79046 -12.60882 -12.46451 -12.13395 -11.80313 -11.48913 -11.34599 -10.94269 -10.73371 -10.59566 -10.41533 -10.18815 -9.85315 -9.62842 -9.08236 -8.93060 -8.53541 -8.30082 -6.68684 -6.04228 -4.03941 2.36906 3.29783 3.38909 3.39528 3.50939 4.45952 4.53685 4.81131 4.91298 5.02272 5.18492 5.23715 5.29343 5.43926 5.59872 5.69910 5.79033 5.85092 5.92814 6.01356 6.09984 6.10748 6.17950 6.33005 6.43419 6.47011 6.71424 7.03297 7.12402 7.76582 7.83800 8.55401 9.01780 9.59023 11.07931 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.008910 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.517616 B = 3141.676046 C = 3408.002010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.127 3.873 3 H 0.102 0.898 4 O -0.548 6.548 5 C -0.129 4.129 6 H 0.080 0.920 7 C -0.151 4.151 8 S -0.168 6.168 9 C -0.059 4.059 10 C 0.015 3.985 11 C -0.473 4.473 12 H 0.083 0.917 13 C 0.083 3.917 14 N -0.893 5.893 15 Si 0.877 3.123 16 H -0.281 1.281 17 H -0.294 1.294 18 H -0.262 1.262 19 C -0.198 4.198 20 C -0.177 4.177 21 H 0.061 0.939 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.372 0.628 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.263 0.737 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 4.209 -3.322 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.067 3.933 3 H 0.120 0.880 4 O -0.354 6.354 5 C -0.258 4.258 6 H 0.098 0.902 7 C -0.210 4.210 8 S 0.062 5.938 9 C -0.207 4.207 10 C 0.013 3.987 11 C -0.511 4.511 12 H 0.100 0.900 13 C -0.119 4.119 14 N -0.530 5.530 15 Si 0.706 3.294 16 H -0.207 1.207 17 H -0.221 1.221 18 H -0.187 1.187 19 C -0.237 4.237 20 C -0.214 4.214 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.220 0.780 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.085 5.013 -2.302 13.284 hybrid contribution -1.501 -1.859 -1.950 3.084 sum -13.585 3.153 -4.252 14.580 Atomic orbital electron populations 1.22567 0.96427 1.02642 1.02476 1.21547 0.91998 0.96439 0.83327 0.88038 1.86639 1.77254 1.28833 1.42658 1.24039 1.00506 0.99442 1.01781 0.90190 1.22109 1.00162 0.95242 1.03453 1.87645 0.98436 1.80950 1.26759 1.23304 1.01089 1.01180 0.95174 1.19070 0.88437 0.99828 0.91348 1.20132 1.35232 0.92864 1.02908 0.89952 1.24894 0.93977 0.98133 0.94907 1.69899 1.38129 1.16229 1.28767 0.86915 0.80633 0.81093 0.80803 1.20696 1.22110 1.18681 1.23000 1.03241 0.97971 0.99479 1.22895 1.02147 0.91280 1.05096 0.91975 0.91718 0.91800 0.78028 0.92505 0.92331 0.91203 0.92989 0.91091 0.92671 0.89191 0.91127 0.89318 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.18 37.16 0.34 -1.48 16 2 C 0.13 1.71 3.39 -26.73 -0.09 1.62 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 4 O -0.55 -8.44 12.89 -35.23 -0.45 -8.89 16 5 C -0.13 -1.91 2.72 -26.73 -0.07 -1.99 16 6 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 7 C -0.15 -2.07 8.44 37.15 0.31 -1.76 16 8 S -0.17 -3.43 19.65 -107.50 -2.11 -5.55 16 9 C -0.06 -1.22 5.64 37.16 0.21 -1.02 16 10 C 0.02 0.35 1.12 -155.62 -0.17 0.18 16 11 C -0.47 -13.18 8.14 -34.44 -0.28 -13.46 16 12 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 13 C 0.08 2.39 5.46 -17.82 -0.10 2.29 16 14 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 15 Si 0.88 21.69 25.06 -169.99 -4.26 17.43 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 18 H -0.26 -6.10 5.41 56.52 0.31 -5.79 16 19 C -0.20 -4.22 7.62 -26.73 -0.20 -4.43 16 20 C -0.18 -3.66 9.89 -26.69 -0.26 -3.92 16 21 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.37 4.70 7.33 45.56 0.33 5.04 16 25 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 26 H 0.06 0.88 6.84 -51.93 -0.36 0.52 16 27 H 0.07 0.99 6.78 -51.93 -0.35 0.64 16 28 H 0.05 0.96 7.95 -51.92 -0.41 0.55 16 29 H 0.07 1.50 5.25 -51.92 -0.27 1.23 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.09 2.02 7.15 -51.93 -0.37 1.65 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 LS Contribution 280.25 15.07 4.22 4.22 Total: -1.00 -30.78 280.25 -6.85 -37.64 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.71 Total: 5.62 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -0.32 Total: -23.97 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.45 Total: -8.89 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.26 Total: 17.43 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.11 Total: -5.55 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.78 -6.85 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300337252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.074 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds