Wall clock time and date at job start Sun Mar 29 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47374 * 2 1 4 4 O 1.42894 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.53006 * 109.47068 * 239.99890 * 2 1 3 6 6 H 1.09005 * 109.47025 * 60.00241 * 5 2 1 7 7 C 1.52994 * 109.47323 * 300.00070 * 5 2 1 8 8 S 1.81407 * 109.47020 * 179.97438 * 5 2 1 9 9 C 1.81395 * 102.99923 * 185.00009 * 8 5 2 10 10 C 1.52998 * 109.46949 * 183.26355 * 9 8 5 11 11 C 1.50696 * 115.56140 * 40.06367 * 10 9 8 12 12 H 1.08009 * 119.99710 * 270.77398 * 11 10 9 13 13 C 1.37877 * 120.00306 * 90.77857 * 11 10 9 14 14 N 1.31516 * 119.99912 * 174.06927 * 13 11 10 15 15 Si 1.86802 * 119.99712 * 354.06063 * 13 11 10 16 16 H 1.48503 * 109.46771 * 92.57168 * 15 13 11 17 17 H 1.48502 * 109.46757 * 212.56930 * 15 13 11 18 18 H 1.48494 * 109.47453 * 332.56759 * 15 13 11 19 19 C 1.53004 * 117.49957 * 185.74759 * 10 9 8 20 20 C 1.53002 * 60.03212 * 107.47918 * 19 10 9 21 21 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47033 * 300.00067 * 1 2 3 23 23 H 1.09005 * 109.47001 * 59.99883 * 1 2 3 24 24 H 0.96698 * 114.00747 * 59.99811 * 4 2 1 25 25 H 1.08996 * 109.47093 * 59.99806 * 7 5 2 26 26 H 1.08997 * 109.47306 * 179.97438 * 7 5 2 27 27 H 1.09005 * 109.47210 * 300.00057 * 7 5 2 28 28 H 1.09005 * 109.47044 * 63.26437 * 9 8 5 29 29 H 1.09001 * 109.47496 * 303.26928 * 9 8 5 30 30 H 0.97005 * 119.99620 * 180.02562 * 14 13 11 31 31 H 1.08996 * 117.50229 * 214.98566 * 19 10 9 32 32 H 1.09001 * 117.49863 * 359.97438 * 19 10 9 33 33 H 1.08996 * 117.49575 * 107.50309 * 20 19 10 34 34 H 1.09001 * 117.50210 * 252.52221 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0400 -0.7213 -1.2493 6 1 1.6767 -0.2074 -2.1393 7 6 1.5300 -2.1637 -1.2493 8 16 3.8541 -0.7206 -1.2497 9 6 4.2620 -1.4677 -2.8515 10 6 5.7800 -1.6147 -2.9738 11 6 6.4937 -2.0544 -1.7215 12 1 6.8454 -1.3183 -1.0136 13 6 6.6979 -3.3963 -1.4794 14 7 7.4209 -3.7759 -0.4485 15 14 5.9473 -4.6751 -2.6156 16 1 6.9240 -5.0281 -3.6771 17 1 5.6041 -5.8906 -1.8345 18 1 4.7174 -4.1232 -3.2382 19 6 6.3369 -2.1029 -4.3126 20 6 6.5121 -0.6400 -3.8998 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7210 -1.5952 1.2329 25 1 0.4400 -2.1637 -1.2493 26 1 1.8930 -2.6774 -2.1395 27 1 1.8933 -2.6776 -0.3593 28 1 3.8929 -0.8297 -3.6545 29 1 3.7948 -2.4498 -2.9239 30 1 7.5648 -4.7201 -0.2784 31 1 7.2195 -2.7420 -4.2877 32 1 5.6218 -2.3197 -5.1062 33 1 7.5099 -0.3169 -3.6032 34 1 5.9119 0.1055 -4.4214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300337252.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:04 Heat of formation + Delta-G solvation = -55.876700 kcal Electronic energy + Delta-G solvation = -14563.750933 eV Core-core repulsion = 12201.648366 eV Total energy + Delta-G solvation = -2362.102566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.05500 -38.70134 -34.18869 -33.94955 -30.44152 -29.43515 -27.41186 -25.86786 -23.31788 -21.78319 -20.87122 -18.55418 -17.79227 -16.92341 -16.75660 -16.35287 -15.70226 -15.46500 -15.12764 -14.85979 -14.64888 -14.06843 -13.70285 -13.25207 -13.10859 -12.81207 -12.63851 -12.49075 -12.36119 -12.06703 -11.95841 -11.78765 -11.65096 -11.02189 -10.82462 -10.64143 -10.44395 -10.04274 -8.30029 -8.22467 -6.26521 0.94782 1.34733 1.36259 1.47792 2.04405 2.39624 3.10366 3.21478 3.50713 3.75401 3.93463 4.03032 4.24699 4.27733 4.31634 4.38865 4.41524 4.53100 4.69106 4.76005 4.83064 4.85140 4.90749 5.03904 5.06342 5.21453 5.29194 5.38044 5.46359 5.73384 6.35502 6.77614 6.83317 7.39361 8.93486 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.008910 C = 0.008214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.517616 B = 3141.676046 C = 3408.002010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.124 3.876 3 H 0.091 0.909 4 O -0.574 6.574 5 C -0.103 4.103 6 H 0.101 0.899 7 C -0.150 4.150 8 S -0.258 6.258 9 C -0.040 4.040 10 C -0.017 4.017 11 C -0.464 4.464 12 H 0.026 0.974 13 C 0.024 3.976 14 N -0.950 5.950 15 Si 0.938 3.062 16 H -0.271 1.271 17 H -0.300 1.300 18 H -0.233 1.233 19 C -0.187 4.187 20 C -0.164 4.164 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.381 0.619 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.179 4.231 -5.776 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.064 3.936 3 H 0.109 0.891 4 O -0.381 6.381 5 C -0.232 4.232 6 H 0.119 0.881 7 C -0.209 4.209 8 S -0.028 6.028 9 C -0.188 4.188 10 C -0.018 4.018 11 C -0.503 4.503 12 H 0.044 0.956 13 C -0.173 4.173 14 N -0.590 5.590 15 Si 0.763 3.237 16 H -0.197 1.197 17 H -0.227 1.227 18 H -0.156 1.156 19 C -0.226 4.226 20 C -0.201 4.201 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.100 0.900 24 H 0.231 0.769 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.151 5.051 -4.783 16.671 hybrid contribution -0.550 -1.725 -1.098 2.118 sum -15.701 3.326 -5.881 17.093 Atomic orbital electron populations 1.22469 0.92947 1.03858 1.03675 1.21682 0.94437 0.95482 0.82016 0.89091 1.86611 1.78082 1.29776 1.43655 1.24079 0.94786 1.00910 1.03381 0.88115 1.22102 1.02446 0.93865 1.02443 1.87953 1.05424 1.81182 1.28271 1.23085 0.98710 1.01540 0.95510 1.19018 0.90012 1.02632 0.90157 1.20167 1.34605 0.91734 1.03787 0.95550 1.25746 0.94542 1.00480 0.96574 1.70066 1.40788 1.16572 1.31565 0.85926 0.80997 0.77897 0.78868 1.19682 1.22709 1.15603 1.23042 1.03031 0.97900 0.98628 1.22935 1.01588 0.91938 1.03640 0.90696 0.91155 0.90025 0.76938 0.88712 0.93336 0.92311 0.89974 0.91362 0.92819 0.90797 0.87600 0.90752 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.18 71.98 0.66 -2.11 16 2 C 0.12 3.08 3.39 30.60 0.10 3.18 16 3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 4 O -0.57 -17.32 12.89 -148.98 -1.92 -19.24 16 5 C -0.10 -2.80 2.72 30.59 0.08 -2.71 16 6 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 7 C -0.15 -3.66 8.44 71.98 0.61 -3.05 16 8 S -0.26 -10.47 19.65 -56.49 -1.11 -11.58 16 9 C -0.04 -1.57 5.64 71.98 0.41 -1.17 16 10 C -0.02 -0.75 1.12 -52.90 -0.06 -0.81 16 11 C -0.46 -26.75 8.14 25.60 0.21 -26.54 16 12 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 13 C 0.02 1.38 5.46 84.65 0.46 1.85 16 14 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 15 Si 0.94 44.54 25.06 68.60 1.72 46.26 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 18 H -0.23 -9.85 5.41 99.48 0.54 -9.32 16 19 C -0.19 -7.43 7.62 30.60 0.23 -7.20 16 20 C -0.16 -6.44 9.89 30.62 0.30 -6.14 16 21 H 0.07 1.04 6.43 -2.38 -0.02 1.03 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.38 9.36 7.33 -74.06 -0.54 8.82 16 25 H 0.09 1.61 6.43 -2.39 -0.02 1.60 16 26 H 0.05 1.29 6.84 -2.39 -0.02 1.27 16 27 H 0.06 1.56 6.78 -2.38 -0.02 1.55 16 28 H 0.08 2.70 7.95 -2.39 -0.02 2.68 16 29 H 0.07 2.67 5.25 -2.39 -0.01 2.66 16 30 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 31 H 0.07 3.18 7.15 -2.39 -0.02 3.16 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.11 3.45 8.09 -2.39 -0.02 3.43 16 Total: -1.00 -70.34 280.25 2.36 -67.98 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.37 Total: 21.70 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 3.01 Total: -44.69 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -1.92 Total: -19.24 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.72 Total: 46.26 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -1.11 Total: -11.58 kcal Total: -70.34 2.36 -67.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300337252.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.104 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds