Wall clock time and date at job start Sun Mar 29 2020 22:11:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08994 * 109.47374 * 2 1
4 4 O 1.42894 * 109.47164 * 120.00262 * 2 1 3
5 5 C 1.53006 * 109.47068 * 239.99890 * 2 1 3
6 6 H 1.09005 * 109.47025 * 60.00241 * 5 2 1
7 7 C 1.52994 * 109.47323 * 300.00070 * 5 2 1
8 8 S 1.81407 * 109.47020 * 179.97438 * 5 2 1
9 9 C 1.81395 * 102.99923 * 185.00009 * 8 5 2
10 10 C 1.52998 * 109.46949 * 183.26355 * 9 8 5
11 11 C 1.50696 * 115.56140 * 40.06367 * 10 9 8
12 12 H 1.08009 * 119.99710 * 270.77398 * 11 10 9
13 13 C 1.37877 * 120.00306 * 90.77857 * 11 10 9
14 14 N 1.31516 * 119.99912 * 174.06927 * 13 11 10
15 15 Si 1.86802 * 119.99712 * 354.06063 * 13 11 10
16 16 H 1.48503 * 109.46771 * 92.57168 * 15 13 11
17 17 H 1.48502 * 109.46757 * 212.56930 * 15 13 11
18 18 H 1.48494 * 109.47453 * 332.56759 * 15 13 11
19 19 C 1.53004 * 117.49957 * 185.74759 * 10 9 8
20 20 C 1.53002 * 60.03212 * 107.47918 * 19 10 9
21 21 H 1.09004 * 109.46912 * 179.97438 * 1 2 3
22 22 H 1.08997 * 109.47033 * 300.00067 * 1 2 3
23 23 H 1.09005 * 109.47001 * 59.99883 * 1 2 3
24 24 H 0.96698 * 114.00747 * 59.99811 * 4 2 1
25 25 H 1.08996 * 109.47093 * 59.99806 * 7 5 2
26 26 H 1.08997 * 109.47306 * 179.97438 * 7 5 2
27 27 H 1.09005 * 109.47210 * 300.00057 * 7 5 2
28 28 H 1.09005 * 109.47044 * 63.26437 * 9 8 5
29 29 H 1.09001 * 109.47496 * 303.26928 * 9 8 5
30 30 H 0.97005 * 119.99620 * 180.02562 * 14 13 11
31 31 H 1.08996 * 117.50229 * 214.98566 * 19 10 9
32 32 H 1.09001 * 117.49863 * 359.97438 * 19 10 9
33 33 H 1.08996 * 117.49575 * 107.50309 * 20 19 10
34 34 H 1.09001 * 117.50210 * 252.52221 * 20 19 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.0400 -0.7213 -1.2493
6 1 1.6767 -0.2074 -2.1393
7 6 1.5300 -2.1637 -1.2493
8 16 3.8541 -0.7206 -1.2497
9 6 4.2620 -1.4677 -2.8515
10 6 5.7800 -1.6147 -2.9738
11 6 6.4937 -2.0544 -1.7215
12 1 6.8454 -1.3183 -1.0136
13 6 6.6979 -3.3963 -1.4794
14 7 7.4209 -3.7759 -0.4485
15 14 5.9473 -4.6751 -2.6156
16 1 6.9240 -5.0281 -3.6771
17 1 5.6041 -5.8906 -1.8345
18 1 4.7174 -4.1232 -3.2382
19 6 6.3369 -2.1029 -4.3126
20 6 6.5121 -0.6400 -3.8998
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 1.7210 -1.5952 1.2329
25 1 0.4400 -2.1637 -1.2493
26 1 1.8930 -2.6774 -2.1395
27 1 1.8933 -2.6776 -0.3593
28 1 3.8929 -0.8297 -3.6545
29 1 3.7948 -2.4498 -2.9239
30 1 7.5648 -4.7201 -0.2784
31 1 7.2195 -2.7420 -4.2877
32 1 5.6218 -2.3197 -5.1062
33 1 7.5099 -0.3169 -3.6032
34 1 5.9119 0.1055 -4.4214
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300337252.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:11:04
Heat of formation + Delta-G solvation = -55.876700 kcal
Electronic energy + Delta-G solvation = -14563.750933 eV
Core-core repulsion = 12201.648366 eV
Total energy + Delta-G solvation = -2362.102566 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.108 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.05500 -38.70134 -34.18869 -33.94955 -30.44152 -29.43515 -27.41186 -25.86786
-23.31788 -21.78319 -20.87122 -18.55418 -17.79227 -16.92341 -16.75660 -16.35287
-15.70226 -15.46500 -15.12764 -14.85979 -14.64888 -14.06843 -13.70285 -13.25207
-13.10859 -12.81207 -12.63851 -12.49075 -12.36119 -12.06703 -11.95841 -11.78765
-11.65096 -11.02189 -10.82462 -10.64143 -10.44395 -10.04274 -8.30029 -8.22467
-6.26521 0.94782 1.34733 1.36259 1.47792 2.04405 2.39624 3.10366
3.21478 3.50713 3.75401 3.93463 4.03032 4.24699 4.27733 4.31634
4.38865 4.41524 4.53100 4.69106 4.76005 4.83064 4.85140 4.90749
5.03904 5.06342 5.21453 5.29194 5.38044 5.46359 5.73384 6.35502
6.77614 6.83317 7.39361 8.93486
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.029859 B = 0.008910 C = 0.008214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 937.517616 B = 3141.676046 C = 3408.002010
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.124 3.876
3 H 0.091 0.909
4 O -0.574 6.574
5 C -0.103 4.103
6 H 0.101 0.899
7 C -0.150 4.150
8 S -0.258 6.258
9 C -0.040 4.040
10 C -0.017 4.017
11 C -0.464 4.464
12 H 0.026 0.974
13 C 0.024 3.976
14 N -0.950 5.950
15 Si 0.938 3.062
16 H -0.271 1.271
17 H -0.300 1.300
18 H -0.233 1.233
19 C -0.187 4.187
20 C -0.164 4.164
21 H 0.074 0.926
22 H 0.069 0.931
23 H 0.081 0.919
24 H 0.381 0.619
25 H 0.094 0.906
26 H 0.048 0.952
27 H 0.058 0.942
28 H 0.082 0.918
29 H 0.068 0.932
30 H 0.263 0.737
31 H 0.073 0.927
32 H 0.106 0.894
33 H 0.074 0.926
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.179 4.231 -5.776 17.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.064 3.936
3 H 0.109 0.891
4 O -0.381 6.381
5 C -0.232 4.232
6 H 0.119 0.881
7 C -0.209 4.209
8 S -0.028 6.028
9 C -0.188 4.188
10 C -0.018 4.018
11 C -0.503 4.503
12 H 0.044 0.956
13 C -0.173 4.173
14 N -0.590 5.590
15 Si 0.763 3.237
16 H -0.197 1.197
17 H -0.227 1.227
18 H -0.156 1.156
19 C -0.226 4.226
20 C -0.201 4.201
21 H 0.093 0.907
22 H 0.088 0.912
23 H 0.100 0.900
24 H 0.231 0.769
25 H 0.113 0.887
26 H 0.067 0.933
27 H 0.077 0.923
28 H 0.100 0.900
29 H 0.086 0.914
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.124 0.876
33 H 0.092 0.908
34 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -15.151 5.051 -4.783 16.671
hybrid contribution -0.550 -1.725 -1.098 2.118
sum -15.701 3.326 -5.881 17.093
Atomic orbital electron populations
1.22469 0.92947 1.03858 1.03675 1.21682 0.94437 0.95482 0.82016
0.89091 1.86611 1.78082 1.29776 1.43655 1.24079 0.94786 1.00910
1.03381 0.88115 1.22102 1.02446 0.93865 1.02443 1.87953 1.05424
1.81182 1.28271 1.23085 0.98710 1.01540 0.95510 1.19018 0.90012
1.02632 0.90157 1.20167 1.34605 0.91734 1.03787 0.95550 1.25746
0.94542 1.00480 0.96574 1.70066 1.40788 1.16572 1.31565 0.85926
0.80997 0.77897 0.78868 1.19682 1.22709 1.15603 1.23042 1.03031
0.97900 0.98628 1.22935 1.01588 0.91938 1.03640 0.90696 0.91155
0.90025 0.76938 0.88712 0.93336 0.92311 0.89974 0.91362 0.92819
0.90797 0.87600 0.90752 0.87563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.77 9.18 71.98 0.66 -2.11 16
2 C 0.12 3.08 3.39 30.60 0.10 3.18 16
3 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16
4 O -0.57 -17.32 12.89 -148.98 -1.92 -19.24 16
5 C -0.10 -2.80 2.72 30.59 0.08 -2.71 16
6 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
7 C -0.15 -3.66 8.44 71.98 0.61 -3.05 16
8 S -0.26 -10.47 19.65 -56.49 -1.11 -11.58 16
9 C -0.04 -1.57 5.64 71.98 0.41 -1.17 16
10 C -0.02 -0.75 1.12 -52.90 -0.06 -0.81 16
11 C -0.46 -26.75 8.14 25.60 0.21 -26.54 16
12 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16
13 C 0.02 1.38 5.46 84.65 0.46 1.85 16
14 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16
15 Si 0.94 44.54 25.06 68.60 1.72 46.26 16
16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
17 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16
18 H -0.23 -9.85 5.41 99.48 0.54 -9.32 16
19 C -0.19 -7.43 7.62 30.60 0.23 -7.20 16
20 C -0.16 -6.44 9.89 30.62 0.30 -6.14 16
21 H 0.07 1.04 6.43 -2.38 -0.02 1.03 16
22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
23 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16
24 H 0.38 9.36 7.33 -74.06 -0.54 8.82 16
25 H 0.09 1.61 6.43 -2.39 -0.02 1.60 16
26 H 0.05 1.29 6.84 -2.39 -0.02 1.27 16
27 H 0.06 1.56 6.78 -2.38 -0.02 1.55 16
28 H 0.08 2.70 7.95 -2.39 -0.02 2.68 16
29 H 0.07 2.67 5.25 -2.39 -0.01 2.66 16
30 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16
31 H 0.07 3.18 7.15 -2.39 -0.02 3.16 16
32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16
33 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16
34 H 0.11 3.45 8.09 -2.39 -0.02 3.43 16
Total: -1.00 -70.34 280.25 2.36 -67.98
By element:
Atomic # 1 Polarization: 21.33 SS G_CDS: 0.37 Total: 21.70 kcal
Atomic # 6 Polarization: -47.70 SS G_CDS: 3.01 Total: -44.69 kcal
Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal
Atomic # 8 Polarization: -17.32 SS G_CDS: -1.92 Total: -19.24 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 1.72 Total: 46.26 kcal
Atomic # 16 Polarization: -10.47 SS G_CDS: -1.11 Total: -11.58 kcal
Total: -70.34 2.36 -67.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300337252.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.104 kcal
(2) G-P(sol) polarization free energy of solvation -70.344 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.241 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.980 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.877 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds