Wall clock time and date at job start Sun Mar 29 2020 21:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47206 * 113.41474 * 2 1 4 4 N 2.60801 * 113.41276 * 0.02562 * 2 1 3 5 5 C 1.53495 * 114.20669 * 226.80085 * 2 1 3 6 6 N 1.47066 * 87.98658 * 220.34216 * 5 2 1 7 7 S 1.65604 * 136.06141 * 206.86286 * 6 5 2 8 8 O 1.42099 * 106.40290 * 203.54246 * 7 6 5 9 9 O 1.42104 * 106.40043 * 336.45755 * 7 6 5 10 10 C 1.76194 * 107.21856 * 89.99787 * 7 6 5 11 11 H 1.07997 * 120.00195 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99958 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00157 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00127 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46962 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47020 * 119.99820 * 14 12 10 17 17 H 1.48500 * 109.47057 * 239.99807 * 14 12 10 18 18 C 1.47067 * 87.88528 * 27.11900 * 6 5 2 19 19 H 1.08997 * 109.47141 * 193.20012 * 1 2 3 20 20 H 1.09002 * 109.47011 * 313.19739 * 1 2 3 21 21 H 1.09003 * 109.47151 * 73.20144 * 1 2 3 22 22 H 1.09005 * 113.46950 * 105.56781 * 5 2 1 23 23 H 1.08994 * 113.52293 * 335.13266 * 5 2 1 24 24 H 0.96993 * 120.00119 * 179.97438 * 13 12 10 25 25 H 1.09007 * 113.46858 * 87.65629 * 18 6 5 26 26 H 1.08993 * 113.47208 * 218.09965 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1149 1.3508 0.0000 4 7 2.5663 2.3933 0.0011 5 6 2.1593 -0.9583 -1.0206 6 7 3.1599 -1.3052 -0.0001 7 16 4.7229 -1.8526 0.0000 8 8 4.9229 -2.4953 1.2514 9 8 4.9203 -2.5029 -1.2480 10 6 5.7714 -0.4366 -0.0055 11 1 5.3411 0.5539 -0.0077 12 6 7.1412 -0.5932 -0.0070 13 7 7.6653 -1.7994 -0.0038 14 14 8.2529 0.9080 -0.0121 15 1 7.4223 2.1390 -0.0133 16 1 9.1117 0.8921 1.1993 17 1 9.1084 0.8863 -1.2257 18 6 2.1594 -0.9583 1.0205 19 1 -0.3633 -1.0005 0.2347 20 1 -0.3633 0.7035 0.7492 21 1 -0.3633 0.2970 -0.9838 22 1 2.5821 -0.4519 -1.8883 23 1 1.5107 -1.7908 -1.2931 24 1 8.6289 -1.9095 -0.0053 25 1 1.5100 -1.7906 1.2924 26 1 2.5821 -0.4519 1.8882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306260241.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:10 Heat of formation + Delta-G solvation = -26.490487 kcal Electronic energy + Delta-G solvation = -14248.851967 eV Core-core repulsion = 11648.650244 eV Total energy + Delta-G solvation = -2600.201722 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.86649 -35.72445 -35.25629 -34.02130 -33.10726 -31.19087 -26.14952 -25.89047 -25.45111 -22.39026 -18.69937 -17.51517 -16.66250 -16.04471 -15.15250 -15.00828 -14.86878 -13.86509 -13.81013 -13.68518 -13.02253 -12.44860 -12.43707 -12.08098 -11.91943 -11.84709 -11.75640 -11.23039 -11.20088 -10.57973 -10.36479 -10.33732 -10.22883 -10.22001 -9.26796 -9.00399 -8.43731 -6.72203 -5.33647 2.08792 2.83819 2.97696 3.05701 3.13879 3.24163 3.94135 4.04953 4.38880 4.42883 4.61769 4.90128 5.15613 5.43056 5.58640 5.61971 5.67572 5.73932 5.76095 5.92365 5.95267 6.07973 6.95489 7.17275 7.32771 7.78273 7.98479 8.88192 10.21719 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.030921 B = 0.011007 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.312576 B = 2543.190318 C = 3149.311806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.022 4.022 3 C 0.238 3.762 4 N -0.426 5.426 5 C 0.148 3.852 6 N -1.049 6.049 7 S 2.733 3.267 8 O -0.997 6.997 9 O -0.997 6.997 10 C -1.015 5.015 11 H 0.101 0.899 12 C 0.134 3.866 13 N -0.846 5.846 14 Si 0.919 3.081 15 H -0.262 1.262 16 H -0.270 1.270 17 H -0.270 1.270 18 C 0.148 3.852 19 H 0.080 0.920 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.291 0.709 25 H 0.097 0.903 26 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 2.033 -0.006 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.027 4.027 3 C -0.080 4.080 4 N -0.101 5.101 5 C 0.020 3.980 6 N -0.884 5.884 7 S 2.836 3.164 8 O -0.987 6.987 9 O -0.987 6.987 10 C -1.149 5.149 11 H 0.119 0.881 12 C -0.084 4.084 13 N -0.476 5.476 14 Si 0.743 3.257 15 H -0.186 1.186 16 H -0.195 1.195 17 H -0.195 1.195 18 C 0.020 3.980 19 H 0.099 0.901 20 H 0.085 0.915 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.115 0.885 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.805 2.474 -0.001 12.061 hybrid contribution 0.749 0.974 -0.006 1.229 sum -11.056 3.449 -0.007 11.581 Atomic orbital electron populations 1.21651 0.90205 1.03639 1.03212 1.19687 0.95730 0.84942 1.02382 1.27972 0.93056 0.93496 0.93522 1.81202 1.08189 1.12718 1.07950 1.22361 0.88759 0.94933 0.91976 1.60878 1.27271 1.85927 1.14306 1.00052 0.68800 0.74748 0.72818 1.93364 1.83524 1.76073 1.45774 1.93365 1.83561 1.75788 1.46020 1.30574 1.04176 1.13471 1.66656 0.88099 1.24736 0.97629 0.97624 0.88401 1.69892 1.15205 1.22234 1.40291 0.86148 0.79454 0.81508 0.78633 1.18583 1.19479 1.19473 1.22393 0.88816 0.94826 0.91967 0.90097 0.91544 0.91175 0.90059 0.88537 0.89869 0.88539 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.27 37.16 0.34 -0.58 15 2 C -0.02 -0.26 1.45 -156.78 -0.23 -0.49 15 3 C 0.24 3.76 14.48 -20.76 -0.30 3.46 15 4 N -0.43 -7.94 18.54 42.15 0.78 -7.16 15 5 C 0.15 2.07 7.87 -8.51 -0.07 2.00 15 6 N -1.05 -20.16 4.11 -125.15 -0.51 -20.68 15 7 S 2.73 72.68 5.55 -107.50 -0.60 72.08 15 8 O -1.00 -29.00 18.02 -57.17 -1.03 -30.03 15 9 O -1.00 -29.00 18.02 -57.17 -1.03 -30.03 15 10 C -1.02 -28.80 9.75 30.60 0.30 -28.50 15 11 H 0.10 2.75 7.81 -52.49 -0.41 2.34 15 12 C 0.13 3.84 5.46 -17.82 -0.10 3.74 15 13 N -0.85 -25.18 13.19 55.43 0.73 -24.45 15 14 Si 0.92 21.50 29.54 -169.99 -5.02 16.48 15 15 H -0.26 -6.11 7.11 56.52 0.40 -5.71 15 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 18 C 0.15 2.07 7.86 -8.51 -0.07 2.00 15 19 H 0.08 0.42 7.89 -51.93 -0.41 0.01 15 20 H 0.07 0.45 8.13 -51.93 -0.42 0.02 15 21 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.08 1.17 8.10 -51.93 -0.42 0.75 15 23 H 0.10 1.01 8.10 -51.93 -0.42 0.58 15 24 H 0.29 7.75 8.31 -40.82 -0.34 7.41 15 25 H 0.10 1.00 7.93 -51.93 -0.41 0.59 15 26 H 0.08 1.17 8.10 -51.93 -0.42 0.75 15 LS Contribution 256.95 15.07 3.87 3.87 Total: -1.00 -37.39 256.95 -5.40 -42.78 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -2.47 Total: -4.50 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.12 Total: -18.38 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 1.00 Total: -52.29 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -2.06 Total: -60.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 72.68 SS G_CDS: -0.60 Total: 72.08 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -37.39 -5.40 -42.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306260241.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.293 kcal (2) G-P(sol) polarization free energy of solvation -37.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds