Wall clock time and date at job start Sun Mar 29 2020 21:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47206 * 113.41474 * 2 1 4 4 N 2.60801 * 113.41276 * 0.02562 * 2 1 3 5 5 C 1.53495 * 114.20669 * 226.80085 * 2 1 3 6 6 N 1.47066 * 87.98658 * 220.34216 * 5 2 1 7 7 S 1.65604 * 136.06141 * 206.86286 * 6 5 2 8 8 O 1.42099 * 106.40290 * 203.54246 * 7 6 5 9 9 O 1.42104 * 106.40043 * 336.45755 * 7 6 5 10 10 C 1.76194 * 107.21856 * 89.99787 * 7 6 5 11 11 H 1.07997 * 120.00195 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99958 * 180.02562 * 10 7 6 13 13 N 1.31518 * 120.00157 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 120.00127 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46962 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47020 * 119.99820 * 14 12 10 17 17 H 1.48500 * 109.47057 * 239.99807 * 14 12 10 18 18 C 1.47067 * 87.88528 * 27.11900 * 6 5 2 19 19 H 1.08997 * 109.47141 * 193.20012 * 1 2 3 20 20 H 1.09002 * 109.47011 * 313.19739 * 1 2 3 21 21 H 1.09003 * 109.47151 * 73.20144 * 1 2 3 22 22 H 1.09005 * 113.46950 * 105.56781 * 5 2 1 23 23 H 1.08994 * 113.52293 * 335.13266 * 5 2 1 24 24 H 0.96993 * 120.00119 * 179.97438 * 13 12 10 25 25 H 1.09007 * 113.46858 * 87.65629 * 18 6 5 26 26 H 1.08993 * 113.47208 * 218.09965 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1149 1.3508 0.0000 4 7 2.5663 2.3933 0.0011 5 6 2.1593 -0.9583 -1.0206 6 7 3.1599 -1.3052 -0.0001 7 16 4.7229 -1.8526 0.0000 8 8 4.9229 -2.4953 1.2514 9 8 4.9203 -2.5029 -1.2480 10 6 5.7714 -0.4366 -0.0055 11 1 5.3411 0.5539 -0.0077 12 6 7.1412 -0.5932 -0.0070 13 7 7.6653 -1.7994 -0.0038 14 14 8.2529 0.9080 -0.0121 15 1 7.4223 2.1390 -0.0133 16 1 9.1117 0.8921 1.1993 17 1 9.1084 0.8863 -1.2257 18 6 2.1594 -0.9583 1.0205 19 1 -0.3633 -1.0005 0.2347 20 1 -0.3633 0.7035 0.7492 21 1 -0.3633 0.2970 -0.9838 22 1 2.5821 -0.4519 -1.8883 23 1 1.5107 -1.7908 -1.2931 24 1 8.6289 -1.9095 -0.0053 25 1 1.5100 -1.7906 1.2924 26 1 2.5821 -0.4519 1.8882 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306260241.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:09 Heat of formation + Delta-G solvation = -57.313773 kcal Electronic energy + Delta-G solvation = -14250.188565 eV Core-core repulsion = 11648.650244 eV Total energy + Delta-G solvation = -2601.538320 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03504 -37.42462 -37.07435 -36.19246 -35.26130 -32.22073 -28.33049 -27.01291 -26.50548 -23.59797 -20.73924 -19.21392 -18.32827 -17.53509 -16.94343 -16.69126 -16.28060 -15.63397 -15.38631 -14.86636 -14.38836 -14.11103 -13.62076 -13.52778 -13.28478 -13.24173 -13.11397 -12.96461 -12.62004 -12.56592 -12.50403 -12.42809 -11.66847 -11.34112 -11.30308 -11.03715 -9.94534 -8.83529 -7.55934 0.18212 1.22004 1.23606 1.40796 1.59552 1.75150 2.12087 2.47742 2.80861 2.85282 3.37566 3.71540 3.80693 3.99730 4.18748 4.66403 4.70576 4.70918 4.92738 5.08170 5.11305 5.17435 5.41666 5.46342 5.61197 5.86322 6.55611 6.70983 8.12327 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.030921 B = 0.011007 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.312576 B = 2543.190318 C = 3149.311806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.001 4.001 3 C 0.252 3.748 4 N -0.484 5.484 5 C 0.140 3.860 6 N -1.069 6.069 7 S 2.750 3.250 8 O -1.035 7.035 9 O -1.035 7.035 10 C -1.043 5.043 11 H 0.100 0.900 12 C 0.075 3.925 13 N -0.888 5.888 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.252 1.252 17 H -0.252 1.252 18 C 0.140 3.860 19 H 0.113 0.887 20 H 0.074 0.926 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.145 0.855 24 H 0.301 0.699 25 H 0.145 0.855 26 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 2.427 -0.020 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.007 4.007 3 C -0.065 4.065 4 N -0.159 5.159 5 C 0.014 3.986 6 N -0.910 5.910 7 S 2.853 3.147 8 O -1.025 7.025 9 O -1.025 7.025 10 C -1.175 5.175 11 H 0.118 0.882 12 C -0.138 4.138 13 N -0.519 5.519 14 Si 0.800 3.200 15 H -0.188 1.188 16 H -0.176 1.176 17 H -0.175 1.175 18 C 0.014 3.986 19 H 0.132 0.868 20 H 0.093 0.907 21 H 0.104 0.896 22 H 0.089 0.911 23 H 0.162 0.838 24 H 0.111 0.889 25 H 0.163 0.837 26 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.739 2.860 -0.014 14.034 hybrid contribution 1.204 0.846 -0.002 1.472 sum -12.535 3.706 -0.016 13.071 Atomic orbital electron populations 1.21748 0.85311 1.06086 1.04665 1.19821 0.98677 0.81921 1.00331 1.28848 0.91698 0.94074 0.91896 1.81205 1.10084 1.14916 1.09728 1.22920 0.87703 0.96869 0.91109 1.60265 1.26531 1.85646 1.18519 0.99016 0.70159 0.74134 0.71410 1.93300 1.85295 1.76958 1.46956 1.93301 1.85328 1.76682 1.47195 1.30994 1.05549 1.14283 1.66702 0.88163 1.25864 0.99411 1.00866 0.87659 1.69951 1.16280 1.24374 1.41322 0.85237 0.77675 0.77050 0.80061 1.18849 1.17573 1.17548 1.22964 0.87774 0.96781 0.91092 0.86821 0.90665 0.89573 0.91119 0.83759 0.88871 0.83713 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.27 71.98 0.67 -0.44 15 2 C 0.00 -0.03 1.45 -53.65 -0.08 -0.11 15 3 C 0.25 7.66 14.48 89.44 1.30 8.95 15 4 N -0.48 -17.99 18.54 20.01 0.37 -17.62 15 5 C 0.14 3.53 7.87 83.18 0.65 4.18 15 6 N -1.07 -39.85 4.11 -549.85 -2.26 -42.11 15 7 S 2.75 148.67 5.55 -56.49 -0.31 148.36 15 8 O -1.03 -61.53 18.02 -128.00 -2.31 -63.84 15 9 O -1.03 -61.53 18.02 -128.00 -2.31 -63.83 15 10 C -1.04 -60.44 9.75 67.73 0.66 -59.78 15 11 H 0.10 5.60 7.81 -2.91 -0.02 5.58 15 12 C 0.08 4.37 5.46 84.65 0.46 4.84 15 13 N -0.89 -53.89 13.19 21.45 0.28 -53.60 15 14 Si 0.98 44.11 29.54 68.60 2.03 46.13 15 15 H -0.26 -11.85 7.11 99.48 0.71 -11.14 15 16 H -0.25 -10.51 7.11 99.48 0.71 -9.80 15 17 H -0.25 -10.49 7.11 99.48 0.71 -9.78 15 18 C 0.14 3.52 7.86 83.18 0.65 4.18 15 19 H 0.11 0.41 7.89 -2.39 -0.02 0.39 15 20 H 0.07 0.65 8.13 -2.39 -0.02 0.63 15 21 H 0.09 0.61 8.14 -2.39 -0.02 0.59 15 22 H 0.07 1.93 8.10 -2.38 -0.02 1.91 15 23 H 0.14 2.31 8.10 -2.39 -0.02 2.29 15 24 H 0.30 16.28 8.31 -92.71 -0.77 15.51 15 25 H 0.15 2.30 7.93 -2.38 -0.02 2.28 15 26 H 0.07 1.92 8.10 -2.39 -0.02 1.90 15 Total: -1.00 -85.33 256.95 1.00 -84.33 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 1.19 Total: 0.36 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.32 Total: -38.18 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -1.61 Total: -113.33 kcal Atomic # 8 Polarization: -123.06 SS G_CDS: -4.61 Total: -127.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 148.67 SS G_CDS: -0.31 Total: 148.36 kcal Total: -85.33 1.00 -84.33 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306260241.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.016 kcal (2) G-P(sol) polarization free energy of solvation -85.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds