Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48500 * 109.47368 * 270.00231 * 3 2 1 5 5 H 1.48496 * 109.47153 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.47514 * 150.00111 * 3 2 1 7 7 C 1.38951 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00329 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99498 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00276 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.46899 * 179.97438 * 12 10 9 14 14 C 1.44545 * 120.61733 * 269.99881 * 13 12 10 15 15 C 1.53419 * 111.71899 * 180.02562 * 14 13 12 16 16 S 1.82066 * 103.93828 * 359.78517 * 15 14 13 17 17 C 1.33005 * 120.61505 * 90.02440 * 13 12 10 18 18 O 1.21623 * 125.19972 * 359.93640 * 17 13 12 19 19 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 20 20 H 0.97004 * 120.00250 * 359.97438 * 9 7 2 21 21 H 1.08992 * 109.46878 * 59.99172 * 12 10 9 22 22 H 1.09007 * 109.46441 * 299.99463 * 12 10 9 23 23 H 1.09002 * 109.03281 * 300.61906 * 14 13 12 24 24 H 1.08999 * 109.04019 * 59.42901 * 14 13 12 25 25 H 1.09006 * 110.53710 * 118.61245 * 15 14 13 26 26 H 1.08995 * 110.53947 * 241.24259 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0034 13 7 2.1958 -5.9764 -0.0036 14 6 2.6751 -6.5349 -1.2477 15 6 3.6595 -7.6875 -1.0106 16 16 3.7667 -7.8067 0.8030 17 6 2.6347 -6.4926 1.1409 18 8 2.3105 -6.1145 2.2505 19 1 -0.4850 0.8400 -0.0004 20 1 0.3533 -2.3907 -0.0016 21 1 0.6181 -4.9201 -0.8940 22 1 0.6161 -4.9213 0.8860 23 1 1.8257 -6.9050 -1.8219 24 1 3.1744 -5.7527 -1.8195 25 1 3.2731 -8.6139 -1.4357 26 1 4.6349 -7.4508 -1.4355 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306397512.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = -62.208087 kcal Electronic energy + Delta-G solvation = -13896.938054 eV Core-core repulsion = 11295.187500 eV Total energy + Delta-G solvation = -2601.750554 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.94050 -37.87043 -36.38042 -34.00271 -31.60512 -31.10784 -27.96848 -25.06701 -24.29508 -21.20004 -19.30534 -18.07228 -17.99125 -16.82831 -16.30641 -15.48570 -14.69444 -14.52384 -14.07264 -14.01702 -13.84799 -13.71367 -12.85431 -12.71803 -12.08023 -11.64652 -11.58874 -11.08501 -10.91184 -10.43842 -10.29489 -9.68997 -9.59574 -9.31259 -8.47176 -8.06420 -8.04352 -6.49010 -3.90293 1.24590 1.87551 2.47854 3.13120 3.21235 3.23775 3.30639 3.75870 4.12865 4.21072 4.59452 4.90199 5.12130 5.23851 5.29622 5.47465 5.57935 5.69554 5.99534 6.29996 7.07175 7.48601 7.80357 7.96614 8.50253 9.08936 9.42402 9.92376 10.68122 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.055515 B = 0.006070 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.249811 B = 4611.791143 C = 4638.977182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.421 3.579 11 O -0.586 6.586 12 C 0.107 3.893 13 N -0.584 5.584 14 C 0.102 3.898 15 C -0.094 4.094 16 S -0.196 6.196 17 C 0.555 3.445 18 O -0.484 6.484 19 H 0.273 0.727 20 H 0.394 0.606 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.114 0.886 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -12.697 -5.371 13.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.205 3.795 11 O -0.471 6.471 12 C -0.023 4.023 13 N -0.319 5.319 14 C -0.023 4.023 15 C -0.243 4.243 16 S 0.029 5.971 17 C 0.233 3.767 18 O -0.361 6.361 19 H 0.083 0.917 20 H 0.227 0.773 21 H 0.119 0.881 22 H 0.122 0.878 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.133 0.867 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.144 -13.072 -4.034 13.847 hybrid contribution -0.826 1.693 -0.814 2.052 sum 1.317 -11.379 -4.848 12.438 Atomic orbital electron populations 1.69604 1.05970 1.28392 1.49916 1.25286 0.95659 0.99820 0.96970 0.85831 0.79314 0.80603 0.78410 1.20328 1.20796 1.19344 1.19708 0.93406 0.82083 1.47897 0.87880 1.41826 1.09272 1.04509 1.63424 1.20146 0.88713 0.85095 0.85545 1.90538 1.13637 1.86951 1.56018 1.21366 0.90845 0.85314 1.04787 1.47272 1.45614 1.33780 1.05214 1.21341 0.98305 0.96299 0.86346 1.24131 1.04129 1.01907 0.94094 1.87221 1.58001 1.44875 1.07014 1.21464 0.83543 0.85366 0.86316 1.90856 1.59801 1.62702 1.22719 0.91696 0.77283 0.88136 0.87776 0.89455 0.88734 0.86737 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.09 13.05 55.50 0.72 -23.37 15 2 C 0.02 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 15 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 15 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 15 9 N -0.55 -13.88 5.29 -10.96 -0.06 -13.93 15 10 C 0.42 9.86 7.85 -10.98 -0.09 9.77 15 11 O -0.59 -15.96 16.01 5.55 0.09 -15.87 15 12 C 0.11 1.85 6.04 -5.20 -0.03 1.81 15 13 N -0.58 -9.63 2.27 -180.66 -0.41 -10.04 15 14 C 0.10 1.18 6.80 -4.87 -0.03 1.15 15 15 C -0.09 -0.91 7.42 37.37 0.28 -0.63 15 16 S -0.20 -2.86 23.25 -107.50 -2.50 -5.36 15 17 C 0.56 10.44 8.27 53.27 0.44 10.88 15 18 O -0.48 -10.93 17.28 5.26 0.09 -10.84 15 19 H 0.27 6.92 8.31 -40.82 -0.34 6.59 15 20 H 0.39 9.29 7.90 -40.82 -0.32 8.96 15 21 H 0.10 1.34 8.08 -51.93 -0.42 0.92 15 22 H 0.10 1.78 7.66 -51.93 -0.40 1.39 15 23 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.09 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.11 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.11 0.97 8.14 -51.93 -0.42 0.54 15 LS Contribution 251.23 15.07 3.79 3.79 Total: -1.00 -34.14 251.23 -5.32 -39.45 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -2.34 Total: 5.23 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 0.33 Total: 15.05 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.26 Total: -47.34 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: 0.18 Total: -26.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.50 Total: -5.36 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -34.14 -5.32 -39.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306397512.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.755 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds