Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48500 * 109.47368 * 270.00231 * 3 2 1 5 5 H 1.48496 * 109.47153 * 30.00141 * 3 2 1 6 6 H 1.48499 * 109.47514 * 150.00111 * 3 2 1 7 7 C 1.38951 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.37090 * 120.00225 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00329 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99498 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00276 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.46899 * 179.97438 * 12 10 9 14 14 C 1.44545 * 120.61733 * 269.99881 * 13 12 10 15 15 C 1.53419 * 111.71899 * 180.02562 * 14 13 12 16 16 S 1.82066 * 103.93828 * 359.78517 * 15 14 13 17 17 C 1.33005 * 120.61505 * 90.02440 * 13 12 10 18 18 O 1.21623 * 125.19972 * 359.93640 * 17 13 12 19 19 H 0.96999 * 119.99928 * 0.02562 * 1 2 3 20 20 H 0.97004 * 120.00250 * 359.97438 * 9 7 2 21 21 H 1.08992 * 109.46878 * 59.99172 * 12 10 9 22 22 H 1.09007 * 109.46441 * 299.99463 * 12 10 9 23 23 H 1.09002 * 109.03281 * 300.61906 * 14 13 12 24 24 H 1.08999 * 109.04019 * 59.42901 * 14 13 12 25 25 H 1.09006 * 110.53710 * 118.61245 * 15 14 13 26 26 H 1.08995 * 110.53947 * 241.24259 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2438 -4.8630 -0.0034 13 7 2.1958 -5.9764 -0.0036 14 6 2.6751 -6.5349 -1.2477 15 6 3.6595 -7.6875 -1.0106 16 16 3.7667 -7.8067 0.8030 17 6 2.6347 -6.4926 1.1409 18 8 2.3105 -6.1145 2.2505 19 1 -0.4850 0.8400 -0.0004 20 1 0.3533 -2.3907 -0.0016 21 1 0.6181 -4.9201 -0.8940 22 1 0.6161 -4.9213 0.8860 23 1 1.8257 -6.9050 -1.8219 24 1 3.1744 -5.7527 -1.8195 25 1 3.2731 -8.6139 -1.4357 26 1 4.6349 -7.4508 -1.4355 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306397512.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = -88.343628 kcal Electronic energy + Delta-G solvation = -13898.071376 eV Core-core repulsion = 11295.187500 eV Total energy + Delta-G solvation = -2602.883876 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.35415 -39.69031 -37.72265 -36.01010 -33.42961 -32.43325 -29.41483 -26.83326 -25.53621 -22.61008 -21.02729 -19.98813 -19.26301 -18.32665 -17.75080 -17.00726 -16.39178 -16.04991 -15.67447 -15.43510 -15.23523 -15.15865 -14.45966 -13.83740 -13.55888 -13.17686 -13.05786 -12.83431 -12.47986 -12.16052 -11.96373 -11.57007 -11.08888 -10.88476 -10.09065 -10.06564 -9.23932 -8.51662 -6.01294 0.02183 0.90323 1.08890 1.34469 1.40095 1.52504 1.93019 2.03681 2.28756 3.13281 3.16605 3.32340 3.92163 4.12612 4.23793 4.34716 4.49227 4.58583 4.73352 4.94952 5.36178 5.84252 5.91452 6.44578 6.53737 7.05466 7.45668 8.00133 8.64970 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.055515 B = 0.006070 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.249811 B = 4611.791143 C = 4638.977182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.563 5.563 10 C 0.418 3.582 11 O -0.629 6.629 12 C 0.116 3.884 13 N -0.584 5.584 14 C 0.089 3.911 15 C -0.077 4.077 16 S -0.201 6.201 17 C 0.532 3.468 18 O -0.544 6.544 19 H 0.280 0.720 20 H 0.399 0.601 21 H 0.151 0.849 22 H 0.105 0.895 23 H 0.135 0.865 24 H 0.084 0.916 25 H 0.161 0.839 26 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -13.603 -7.208 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.816 3.184 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.200 5.200 10 C 0.205 3.795 11 O -0.517 6.517 12 C -0.014 4.014 13 N -0.318 5.318 14 C -0.034 4.034 15 C -0.225 4.225 16 S 0.025 5.975 17 C 0.211 3.789 18 O -0.425 6.425 19 H 0.089 0.911 20 H 0.234 0.766 21 H 0.169 0.831 22 H 0.123 0.877 23 H 0.152 0.848 24 H 0.103 0.897 25 H 0.178 0.822 26 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.841 -14.012 -5.924 15.324 hybrid contribution -0.688 1.895 -0.318 2.041 sum 1.152 -12.118 -6.242 13.680 Atomic orbital electron populations 1.69654 1.06769 1.29540 1.49555 1.26036 0.96560 1.02378 0.95911 0.84933 0.77755 0.76818 0.78871 1.19086 1.19474 1.20196 1.19632 0.92639 0.83965 1.50423 0.90537 1.41875 1.09480 1.04562 1.64057 1.21243 0.88554 0.86616 0.83116 1.90502 1.15871 1.87953 1.57359 1.21323 0.90615 0.82263 1.07213 1.47552 1.44984 1.32907 1.06330 1.21769 1.00565 0.96627 0.84402 1.24483 1.04995 1.03269 0.89715 1.87188 1.56061 1.42227 1.12033 1.22188 0.84071 0.86410 0.86202 1.90807 1.61971 1.65036 1.24712 0.91065 0.76619 0.83100 0.87717 0.84767 0.89735 0.82158 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.70 13.05 21.66 0.28 -48.42 15 2 C -0.01 -0.44 5.50 84.93 0.47 0.03 15 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 15 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.34 -19.13 9.68 84.04 0.81 -18.31 15 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 15 9 N -0.56 -28.62 5.29 -306.97 -1.62 -30.25 15 10 C 0.42 19.79 7.85 87.66 0.69 20.47 15 11 O -0.63 -35.07 16.01 -3.06 -0.05 -35.12 15 12 C 0.12 3.86 6.04 85.64 0.52 4.38 15 13 N -0.58 -18.36 2.27 -844.70 -1.91 -20.27 15 14 C 0.09 1.76 6.80 86.88 0.59 2.35 15 15 C -0.08 -1.17 7.42 72.12 0.54 -0.63 15 16 S -0.20 -5.56 23.25 -56.49 -1.31 -6.87 15 17 C 0.53 19.95 8.27 130.07 1.08 21.02 15 18 O -0.54 -25.44 17.28 -4.10 -0.07 -25.51 15 19 H 0.28 13.90 8.31 -92.71 -0.77 13.13 15 20 H 0.40 18.97 7.90 -92.70 -0.73 18.24 15 21 H 0.15 3.50 8.08 -2.39 -0.02 3.48 15 22 H 0.10 3.55 7.66 -2.38 -0.02 3.53 15 23 H 0.13 1.47 8.14 -2.39 -0.02 1.45 15 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 25 H 0.16 1.09 8.14 -2.38 -0.02 1.07 15 26 H 0.13 1.66 8.14 -2.39 -0.02 1.64 15 Total: -1.00 -77.79 251.23 2.51 -75.28 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.48 Total: 17.07 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 4.69 Total: 29.31 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.25 Total: -98.94 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.12 Total: -60.64 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -1.31 Total: -6.87 kcal Total: -77.79 2.51 -75.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306397512.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.063 kcal (2) G-P(sol) polarization free energy of solvation -77.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds