Wall clock time and date at job start Sun Mar 29 2020 21:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42107 * 110.54065 * 2 1 4 4 O 1.42093 * 110.54770 * 223.24758 * 2 1 3 5 5 C 1.76201 * 104.44860 * 111.62378 * 2 1 3 6 6 N 1.30496 * 125.65158 * 89.98009 * 5 2 1 7 7 C 1.34130 * 109.26014 * 180.02562 * 6 5 2 8 8 C 1.34674 * 108.01710 * 359.97438 * 7 6 5 9 9 N 1.35054 * 125.64909 * 270.29163 * 5 2 1 10 10 C 1.46496 * 126.39961 * 359.97438 * 9 5 2 11 11 C 1.50700 * 109.47139 * 85.14404 * 10 9 5 12 12 H 1.08002 * 119.99822 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00072 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00036 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99906 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47221 * 60.00278 * 15 13 11 17 17 H 1.48501 * 109.47156 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47161 * 299.99929 * 15 13 11 19 19 H 1.09002 * 109.47417 * 308.37602 * 1 2 3 20 20 H 1.09001 * 109.47265 * 68.37486 * 1 2 3 21 21 H 1.09004 * 109.47242 * 188.37472 * 1 2 3 22 22 H 1.07997 * 125.98942 * 179.97438 * 7 6 5 23 23 H 1.08002 * 126.58669 * 179.97438 * 8 7 6 24 24 H 1.09001 * 109.47200 * 205.15089 * 10 9 5 25 25 H 1.09002 * 109.47024 * 325.14755 * 10 9 5 26 26 H 0.97003 * 119.99703 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9116 5 6 2.2536 -0.6288 1.5862 6 7 2.4430 -1.8860 1.8802 7 6 2.7636 -1.9934 3.1782 8 6 2.7738 -0.7555 3.7085 9 7 2.4446 0.1100 2.7005 10 6 2.3256 1.5661 2.8091 11 6 0.8854 1.9354 3.0551 12 1 0.1339 1.1627 3.1240 13 6 0.5272 3.2596 3.1931 14 7 1.4423 4.2005 3.1097 15 14 -1.2579 3.7174 3.4986 16 1 -1.7216 3.0869 4.7607 17 1 -1.3786 5.1934 3.6086 18 1 -2.0928 3.2358 2.3689 19 1 -0.3634 0.6380 0.8056 20 1 -0.3634 0.3787 -0.9553 21 1 -0.3634 -1.0167 0.1497 22 1 2.9764 -2.9115 3.7055 23 1 2.9942 -0.4961 4.7335 24 1 2.9382 1.9199 3.6384 25 1 2.6661 2.0286 1.8827 26 1 1.1903 5.1322 3.2072 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306678955.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:39 Heat of formation + Delta-G solvation = -35.005490 kcal Electronic energy + Delta-G solvation = -14471.047242 eV Core-core repulsion = 11870.476281 eV Total energy + Delta-G solvation = -2600.570961 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 230.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.95944 -38.23415 -37.05966 -35.91345 -33.98883 -30.89389 -30.23999 -29.22840 -25.33209 -23.18515 -22.35888 -19.86483 -18.98566 -18.42112 -17.34424 -16.85562 -16.76777 -16.30739 -15.92050 -15.20166 -14.49610 -14.29708 -14.04774 -13.99034 -13.83836 -13.19719 -13.03356 -12.96550 -12.74331 -12.43623 -12.19585 -11.98316 -11.93806 -11.24474 -10.68829 -10.52305 -9.79501 -8.33544 -6.52090 -0.91408 0.74193 1.42682 1.43547 1.52321 1.71496 1.92201 2.01222 2.36462 2.91565 3.01558 3.20872 3.89261 4.06771 4.25134 4.31058 4.46912 4.69437 4.91436 5.07510 5.40583 5.52628 5.74530 5.78252 5.99700 6.58487 6.78392 7.20201 8.75869 Molecular weight = 230.05amu Principal moments of inertia in cm(-1) A = 0.028247 B = 0.011474 C = 0.009676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.021700 B = 2439.636751 C = 2893.165908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 S 2.529 3.471 3 O -0.957 6.957 4 O -0.954 6.954 5 C -0.366 4.366 6 N -0.439 5.439 7 C -0.050 4.050 8 C -0.018 4.018 9 N -0.380 5.380 10 C 0.206 3.794 11 C -0.564 4.564 12 H 0.073 0.927 13 C 0.025 3.975 14 N -0.914 5.914 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.256 1.256 19 H 0.139 0.861 20 H 0.170 0.830 21 H 0.157 0.843 22 H 0.211 0.789 23 H 0.204 0.796 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 -6.748 -1.074 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.773 4.773 2 S 2.706 3.294 3 O -0.953 6.953 4 O -0.951 6.951 5 C -0.703 4.703 6 N -0.160 5.160 7 C -0.205 4.205 8 C -0.160 4.160 9 N -0.057 5.057 10 C 0.086 3.914 11 C -0.602 4.602 12 H 0.091 0.909 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.788 3.212 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.180 1.180 19 H 0.157 0.843 20 H 0.187 0.813 21 H 0.175 0.825 22 H 0.228 0.772 23 H 0.221 0.779 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.504 -6.715 -2.294 7.914 hybrid contribution -0.658 0.910 1.706 2.042 sum -4.162 -5.805 -0.589 7.167 Atomic orbital electron populations 1.29969 1.18891 1.14104 1.14294 1.04646 0.80590 0.72907 0.71282 1.93574 1.79898 1.36814 1.85055 1.93515 1.79847 1.62303 1.59429 1.36312 1.24109 0.95343 1.14511 1.70134 1.14042 1.15504 1.16368 1.23142 1.08092 0.98466 0.90762 1.23817 1.05207 0.90470 0.96515 1.45902 1.42489 1.10089 1.07216 1.20240 0.99381 0.70718 1.01052 1.21386 0.92187 0.93280 1.53304 0.90885 1.25796 1.02567 0.95737 0.93662 1.70036 1.35787 1.01327 1.47980 0.85498 0.78635 0.77434 0.79666 1.19178 1.20676 1.18002 0.84265 0.81255 0.82469 0.77228 0.77920 0.94077 0.90972 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -15.91 10.79 113.37 1.22 -14.69 15 2 S 2.53 93.76 5.88 -56.49 -0.33 93.43 15 3 O -0.96 -42.72 15.12 -127.65 -1.93 -44.65 15 4 O -0.95 -38.39 17.93 -127.65 -2.29 -40.68 15 5 C -0.37 -15.21 7.56 180.26 1.36 -13.84 15 6 N -0.44 -17.61 11.23 -197.73 -2.22 -19.83 15 7 C -0.05 -1.69 11.87 83.52 0.99 -0.70 15 8 C -0.02 -0.64 11.58 83.09 0.96 0.32 15 9 N -0.38 -16.35 2.73 -530.02 -1.45 -17.80 15 10 C 0.21 10.09 5.48 85.63 0.47 10.56 15 11 C -0.56 -28.05 9.30 25.60 0.24 -27.81 15 12 H 0.07 3.45 7.81 -2.91 -0.02 3.43 15 13 C 0.02 1.25 5.46 84.65 0.46 1.72 15 14 N -0.91 -50.04 13.29 21.45 0.28 -49.75 15 15 Si 0.96 38.87 29.54 68.60 2.03 40.90 15 16 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 17 H -0.28 -11.28 7.11 99.48 0.71 -10.57 15 18 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 19 H 0.14 3.97 8.06 -2.39 -0.02 3.95 15 20 H 0.17 3.09 8.14 -2.39 -0.02 3.07 15 21 H 0.16 3.24 8.14 -2.39 -0.02 3.22 15 22 H 0.21 5.12 8.06 -2.91 -0.02 5.10 15 23 H 0.20 5.79 8.06 -2.91 -0.02 5.77 15 24 H 0.04 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.07 3.90 5.60 -2.39 -0.01 3.89 15 26 H 0.27 14.06 8.31 -92.71 -0.77 13.29 15 Total: -1.00 -69.24 249.39 0.99 -68.25 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.19 Total: 14.59 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 5.71 Total: -44.45 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -3.38 Total: -87.39 kcal Atomic # 8 Polarization: -81.11 SS G_CDS: -4.22 Total: -85.33 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Atomic # 16 Polarization: 93.76 SS G_CDS: -0.33 Total: 93.43 kcal Total: -69.24 0.99 -68.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306678955.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.247 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds