Wall clock time and date at job start Sun Mar 29 2020 21:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48497 * 109.47091 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47006 * 29.99515 * 3 2 1 6 6 H 1.48501 * 109.47496 * 149.99437 * 3 2 1 7 7 C 1.38805 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00090 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99757 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.38425 * 120.02136 * 90.00024 * 11 10 9 13 13 F 1.35101 * 120.01402 * 359.70506 * 12 11 10 14 14 C 1.38476 * 119.97328 * 179.97438 * 12 11 10 15 15 C 1.38207 * 120.02410 * 0.02562 * 14 12 11 16 16 C 1.38207 * 120.05360 * 359.97438 * 15 14 12 17 17 C 1.38412 * 120.02814 * 269.97657 * 11 10 9 18 18 F 1.35096 * 120.01191 * 0.02562 * 17 11 10 19 19 H 0.96993 * 120.00117 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.47198 * 60.00327 * 10 9 7 21 21 H 1.09006 * 109.47484 * 300.00090 * 10 9 7 22 22 H 1.08001 * 119.98752 * 179.97438 * 14 12 11 23 23 H 1.08000 * 119.97200 * 180.02562 * 15 14 12 24 24 H 1.07995 * 119.99247 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 6 6.2562 -3.3467 1.1993 13 9 5.5917 -3.2299 2.3698 14 6 7.6220 -3.5752 1.1980 15 6 8.3031 -3.6886 0.0008 16 6 7.6220 -3.5748 -1.1964 17 6 6.2561 -3.3469 -1.1976 18 9 5.5906 -3.2356 -2.3680 19 1 -0.4850 0.8400 -0.0004 20 1 3.6440 -3.4314 -0.8894 21 1 3.6433 -3.4319 0.8907 22 1 8.1554 -3.6639 2.1330 23 1 9.3682 -3.8672 0.0008 24 1 8.1552 -3.6632 -2.1314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307540278.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:47 Heat of formation + Delta-G solvation = -76.284290 kcal Electronic energy + Delta-G solvation = -13273.595711 eV Core-core repulsion = 10527.854500 eV Total energy + Delta-G solvation = -2745.741210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.76065 -48.75188 -38.72435 -32.73131 -32.45488 -30.22085 -26.99801 -25.57146 -22.74321 -21.87055 -18.07073 -17.57863 -17.14664 -15.96327 -15.75969 -15.42135 -15.02901 -15.00272 -14.24999 -14.10492 -13.54751 -12.85325 -12.75288 -12.61250 -11.98132 -11.61961 -11.48709 -11.33251 -11.03333 -10.61794 -9.93084 -9.02763 -8.88545 -8.67736 -8.40641 -6.98437 -6.30136 -4.03358 0.99848 1.03868 2.91349 3.28880 3.36697 3.44088 3.72118 4.03669 4.29486 4.50706 4.53270 4.76109 4.77263 4.96296 5.08824 5.17665 5.66705 5.76810 5.99920 6.04061 6.14920 6.21044 6.26144 6.84213 7.93494 8.42626 9.14979 10.79259 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.008137 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.978022 B = 3440.149176 C = 3670.591516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.094 3.906 3 Si 0.859 3.141 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.238 1.238 7 C -0.505 4.505 8 H 0.090 0.910 9 S -0.191 6.191 10 C -0.053 4.053 11 C -0.127 4.127 12 C 0.140 3.860 13 F -0.123 7.123 14 C -0.168 4.168 15 C -0.071 4.071 16 C -0.168 4.168 17 C 0.139 3.861 18 F -0.123 7.123 19 H 0.271 0.729 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.140 0.860 23 H 0.140 0.860 24 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.312 -7.150 0.084 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.115 4.115 3 Si 0.684 3.316 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.162 1.162 7 C -0.653 4.653 8 H 0.108 0.892 9 S 0.038 5.962 10 C -0.200 4.200 11 C -0.130 4.130 12 C 0.118 3.882 13 F -0.101 7.101 14 C -0.187 4.187 15 C -0.090 4.090 16 C -0.187 4.187 17 C 0.118 3.882 18 F -0.101 7.101 19 H 0.081 0.919 20 H 0.105 0.895 21 H 0.106 0.894 22 H 0.158 0.842 23 H 0.158 0.842 24 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.744 -6.141 0.087 17.835 hybrid contribution -1.040 -0.128 -0.034 1.048 sum 15.705 -6.269 0.053 16.910 Atomic orbital electron populations 1.69928 1.05845 1.27756 1.48015 1.24752 0.94502 0.98928 0.93283 0.86709 0.81764 0.83343 0.79796 1.19245 1.19880 1.16200 1.22125 0.86837 0.97607 1.58697 0.89159 1.84365 1.11889 1.02433 1.97497 1.21953 0.91086 1.01256 1.05732 1.19703 0.97234 1.04492 0.91532 1.17210 0.89957 1.00200 0.80795 1.91546 1.80808 1.92909 1.44858 1.21139 0.92229 1.05212 1.00121 1.20742 1.00059 0.97604 0.90599 1.21138 0.92235 1.05206 1.00121 1.17207 0.89950 1.00241 0.80788 1.91544 1.80754 1.92965 1.44872 0.91895 0.89454 0.89411 0.84221 0.84245 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.87 13.97 55.49 0.78 -26.09 14 2 C 0.09 2.78 5.50 -17.43 -0.10 2.69 14 3 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 14 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 14 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 14 6 H -0.24 -5.96 6.74 56.52 0.38 -5.57 14 7 C -0.51 -14.90 10.04 30.94 0.31 -14.59 14 8 H 0.09 2.82 8.03 -52.48 -0.42 2.39 14 9 S -0.19 -4.85 19.39 -107.50 -2.08 -6.93 14 10 C -0.05 -1.11 5.44 36.01 0.20 -0.92 14 11 C -0.13 -2.21 5.15 -104.49 -0.54 -2.75 14 12 C 0.14 2.19 7.24 -39.42 -0.29 1.91 14 13 F -0.12 -2.12 16.48 2.25 0.04 -2.08 14 14 C -0.17 -1.98 10.03 -39.50 -0.40 -2.38 14 15 C -0.07 -0.72 10.04 -39.60 -0.40 -1.11 14 16 C -0.17 -1.98 10.03 -39.50 -0.40 -2.37 14 17 C 0.14 2.19 7.24 -39.43 -0.29 1.90 14 18 F -0.12 -2.12 16.48 2.25 0.04 -2.08 14 19 H 0.27 7.67 8.31 -40.82 -0.34 7.33 14 20 H 0.09 1.82 7.64 -51.91 -0.40 1.42 14 21 H 0.09 1.83 7.65 -51.91 -0.40 1.43 14 22 H 0.14 1.27 8.06 -52.49 -0.42 0.85 14 23 H 0.14 0.89 8.06 -52.49 -0.42 0.47 14 24 H 0.14 1.27 8.06 -52.49 -0.42 0.85 14 LS Contribution 241.51 15.07 3.64 3.64 Total: -1.00 -31.65 241.51 -5.84 -37.49 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -1.64 Total: -3.42 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.89 Total: -17.63 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.78 Total: -26.09 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.07 Total: -4.16 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.08 Total: -6.93 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.65 -5.84 -37.49 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307540278.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.798 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds