Wall clock time and date at job start Sun Mar 29 2020 21:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48497 * 109.47091 * 269.99647 * 3 2 1 5 5 H 1.48505 * 109.47006 * 29.99515 * 3 2 1 6 6 H 1.48501 * 109.47496 * 149.99437 * 3 2 1 7 7 C 1.38805 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00090 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99757 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.38425 * 120.02136 * 90.00024 * 11 10 9 13 13 F 1.35101 * 120.01402 * 359.70506 * 12 11 10 14 14 C 1.38476 * 119.97328 * 179.97438 * 12 11 10 15 15 C 1.38207 * 120.02410 * 0.02562 * 14 12 11 16 16 C 1.38207 * 120.05360 * 359.97438 * 15 14 12 17 17 C 1.38412 * 120.02814 * 269.97657 * 11 10 9 18 18 F 1.35096 * 120.01191 * 0.02562 * 17 11 10 19 19 H 0.96993 * 120.00117 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.47198 * 60.00327 * 10 9 7 21 21 H 1.09006 * 109.47484 * 300.00090 * 10 9 7 22 22 H 1.08001 * 119.98752 * 179.97438 * 14 12 11 23 23 H 1.08000 * 119.97200 * 180.02562 * 15 14 12 24 24 H 1.07995 * 119.99247 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0008 12 6 6.2562 -3.3467 1.1993 13 9 5.5917 -3.2299 2.3698 14 6 7.6220 -3.5752 1.1980 15 6 8.3031 -3.6886 0.0008 16 6 7.6220 -3.5748 -1.1964 17 6 6.2561 -3.3469 -1.1976 18 9 5.5906 -3.2356 -2.3680 19 1 -0.4850 0.8400 -0.0004 20 1 3.6440 -3.4314 -0.8894 21 1 3.6433 -3.4319 0.8907 22 1 8.1554 -3.6639 2.1330 23 1 9.3682 -3.8672 0.0008 24 1 8.1552 -3.6632 -2.1314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307540278.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:47 Heat of formation + Delta-G solvation = -95.760720 kcal Electronic energy + Delta-G solvation = -13274.440272 eV Core-core repulsion = 10527.854500 eV Total energy + Delta-G solvation = -2746.585772 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.99370 -49.98360 -39.78303 -34.75247 -33.97882 -31.24274 -28.51525 -27.71429 -23.81869 -23.04600 -19.87930 -19.06142 -18.33798 -17.28641 -17.18234 -16.79229 -16.57987 -16.27876 -16.00318 -15.40523 -15.00872 -14.70514 -14.34431 -13.68816 -13.51845 -13.26489 -13.08102 -12.74616 -12.69305 -12.19273 -11.93863 -11.23110 -10.85979 -9.77917 -9.72196 -9.09784 -8.57636 -6.31147 -0.13362 0.00644 1.08201 1.27159 1.42080 1.64069 2.19210 2.48974 2.56017 2.79739 2.93524 3.42252 3.44007 3.61222 3.91125 4.25387 4.29660 4.49612 4.84029 4.91581 5.06100 5.09729 5.21544 5.63743 5.81419 6.03578 6.85100 8.55673 Molecular weight = 230.03amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.008137 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.978022 B = 3440.149176 C = 3670.591516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.041 3.959 3 Si 0.924 3.076 4 H -0.259 1.259 5 H -0.256 1.256 6 H -0.232 1.232 7 C -0.528 4.528 8 H 0.051 0.949 9 S -0.198 6.198 10 C -0.037 4.037 11 C -0.161 4.161 12 C 0.116 3.884 13 F -0.141 7.141 14 C -0.153 4.153 15 C -0.044 4.044 16 C -0.153 4.153 17 C 0.116 3.884 18 F -0.141 7.141 19 H 0.279 0.721 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.174 0.826 23 H 0.194 0.806 24 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.283 -6.916 0.102 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.745 3.255 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.156 1.156 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.032 5.968 10 C -0.184 4.184 11 C -0.164 4.164 12 C 0.095 3.905 13 F -0.119 7.119 14 C -0.172 4.172 15 C -0.062 4.062 16 C -0.172 4.172 17 C 0.095 3.905 18 F -0.119 7.119 19 H 0.088 0.912 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.191 0.809 23 H 0.212 0.788 24 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 20.709 -5.918 0.107 21.538 hybrid contribution -2.168 -0.384 -0.045 2.202 sum 18.541 -6.302 0.062 19.583 Atomic orbital electron populations 1.70024 1.07523 1.29267 1.48717 1.25752 0.95471 1.02681 0.92546 0.85740 0.80673 0.78702 0.80393 1.18357 1.18028 1.15596 1.22309 0.89692 0.96493 1.59003 0.93078 1.83963 1.08001 1.07296 1.97515 1.21781 0.94609 0.97428 1.04623 1.19545 0.94949 1.08362 0.93560 1.17611 0.91601 1.01738 0.79555 1.91499 1.81519 1.93287 1.45630 1.21601 0.90196 1.02801 1.02569 1.21411 1.02276 0.93780 0.88782 1.21600 0.90202 1.02791 1.02566 1.17607 0.91590 1.01767 0.79547 1.91497 1.81465 1.93338 1.45637 0.91182 0.90552 0.90514 0.80886 0.78843 0.80883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.74 13.97 21.65 0.30 -57.44 14 2 C 0.04 2.47 5.50 84.86 0.47 2.94 14 3 Si 0.92 45.39 27.74 68.60 1.90 47.29 14 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 14 5 H -0.26 -11.73 7.11 99.48 0.71 -11.02 14 6 H -0.23 -11.12 6.74 99.48 0.67 -10.45 14 7 C -0.53 -32.60 10.04 67.96 0.68 -31.92 14 8 H 0.05 3.42 8.03 -2.91 -0.02 3.40 14 9 S -0.20 -10.26 19.39 -56.49 -1.10 -11.36 14 10 C -0.04 -1.62 5.44 71.24 0.39 -1.24 14 11 C -0.16 -5.62 5.15 -19.78 -0.10 -5.72 14 12 C 0.12 3.49 7.24 22.37 0.16 3.65 14 13 F -0.14 -4.85 16.48 44.97 0.74 -4.11 14 14 C -0.15 -2.93 10.03 22.32 0.22 -2.71 14 15 C -0.04 -0.62 10.04 22.25 0.22 -0.40 14 16 C -0.15 -2.92 10.03 22.32 0.22 -2.70 14 17 C 0.12 3.48 7.24 22.37 0.16 3.65 14 18 F -0.14 -4.84 16.48 44.97 0.74 -4.10 14 19 H 0.28 16.06 8.31 -92.71 -0.77 15.29 14 20 H 0.08 3.41 7.64 -2.39 -0.02 3.39 14 21 H 0.08 3.43 7.65 -2.39 -0.02 3.41 14 22 H 0.17 2.18 8.06 -2.91 -0.02 2.15 14 23 H 0.19 0.79 8.06 -2.91 -0.02 0.77 14 24 H 0.17 2.17 8.06 -2.91 -0.02 2.15 14 Total: -1.00 -72.86 241.51 6.21 -66.66 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: 1.18 Total: -2.50 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 2.43 Total: -34.44 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.30 Total: -57.44 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 1.48 Total: -8.21 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -10.26 SS G_CDS: -1.10 Total: -11.36 kcal Total: -72.86 6.21 -66.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307540278.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.103 kcal (2) G-P(sol) polarization free energy of solvation -72.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds