Wall clock time and date at job start Sun Mar 29 2020 21:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.59597 * 300.32503 * 14 12 11 16 16 C 1.52940 * 109.60713 * 179.97438 * 14 12 11 17 17 C 1.53705 * 112.48893 * 209.96603 * 16 14 12 18 18 S 1.83389 * 104.97333 * 2.82668 * 17 16 14 19 19 C 1.55154 * 109.60431 * 60.45887 * 14 12 11 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08996 * 108.88489 * 330.75923 * 16 14 12 26 26 H 1.09003 * 108.88559 * 89.17079 * 16 14 12 27 27 H 1.09000 * 110.33863 * 121.70304 * 17 16 14 28 28 H 1.09004 * 110.34134 * 243.94668 * 17 16 14 29 29 H 1.09004 * 111.13450 * 279.28332 * 19 14 12 30 30 H 1.08993 * 111.13195 * 43.46125 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5195 -4.9194 0.0167 12 6 2.2506 -6.0451 0.0222 13 8 3.4573 -5.9819 0.0223 14 6 1.5666 -7.3879 0.0284 15 1 0.9384 -7.4741 0.9150 16 6 2.6174 -8.4991 0.0333 17 6 2.1273 -9.7748 -0.6703 18 16 0.4585 -9.3549 -1.3044 19 6 0.6885 -7.5307 -1.2428 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 3.5135 -8.1395 -0.4722 26 1 2.8708 -8.7406 1.0656 27 1 2.7923 -10.0321 -1.4947 28 1 2.0664 -10.5996 0.0398 29 1 -0.2659 -7.0185 -1.1207 30 1 1.2152 -7.1708 -2.1266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308152669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:33 Heat of formation + Delta-G solvation = -106.431642 kcal Electronic energy + Delta-G solvation = -13716.278509 eV Core-core repulsion = 11216.150621 eV Total energy + Delta-G solvation = -2500.127888 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29269 -36.76750 -35.50600 -33.39198 -30.66613 -29.84831 -26.02649 -24.99494 -22.62754 -20.93919 -19.86825 -17.73493 -16.97353 -16.49951 -16.12467 -15.73837 -15.08732 -14.55027 -14.15238 -13.60286 -13.28972 -12.74289 -12.43955 -12.25372 -12.16280 -11.82918 -11.28450 -11.15087 -11.02066 -10.80428 -10.78753 -10.61607 -10.00485 -9.72220 -9.63473 -9.35166 -8.47659 -7.94693 -6.13696 -4.18622 1.56356 1.99352 2.42706 3.00705 3.27809 3.32163 3.35371 4.23485 4.35541 4.48737 4.59959 4.74069 4.84829 5.17128 5.22862 5.30812 5.40423 5.51316 5.68784 5.84104 6.01022 6.01659 6.56744 6.87363 7.50021 7.56875 7.81530 8.06736 8.19750 8.86583 9.46106 10.97687 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.064470 B = 0.004584 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.206850 B = 6106.878936 C = 6428.465452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.352 6.352 12 C 0.464 3.536 13 O -0.513 6.513 14 C -0.086 4.086 15 H 0.122 0.878 16 C -0.124 4.124 17 C -0.067 4.067 18 S -0.291 6.291 19 C -0.054 4.054 20 H 0.264 0.736 21 H 0.028 0.972 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -16.807 -0.610 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.268 6.268 12 C 0.305 3.695 13 O -0.403 6.403 14 C -0.108 4.108 15 H 0.140 0.860 16 C -0.163 4.163 17 C -0.215 4.215 18 S -0.064 6.064 19 C -0.203 4.203 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.478 -17.331 -0.965 17.420 hybrid contribution 1.509 1.697 0.382 2.303 sum 2.987 -15.633 -0.584 15.927 Atomic orbital electron populations 1.69957 1.06097 1.27170 1.49550 1.24974 0.94915 0.99383 0.94778 0.86528 0.79494 0.82457 0.78798 1.20045 1.21077 1.20059 1.20930 0.93135 0.90112 1.52524 0.92315 1.19172 0.94160 0.88968 0.98924 1.23700 0.96448 0.78635 1.01024 1.86527 1.42303 1.15747 1.82216 1.23150 0.86377 0.87089 0.72879 1.90631 1.15703 1.88110 1.45806 1.21953 0.97348 0.90162 1.01290 0.86006 1.21892 0.99303 0.91752 1.03317 1.23931 0.94547 1.00365 1.02633 1.87899 1.22663 1.07992 1.87841 1.24324 1.03851 0.93101 0.98981 0.92600 0.95314 0.95311 0.92212 0.92226 0.88780 0.89457 0.88841 0.87995 0.85841 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.61 5.40 37.16 0.20 1.81 16 11 O -0.35 -6.69 10.17 -39.25 -0.40 -7.09 16 12 C 0.46 7.56 7.23 36.00 0.26 7.82 16 13 O -0.51 -9.54 15.13 -18.76 -0.28 -9.82 16 14 C -0.09 -1.02 3.00 -90.66 -0.27 -1.29 16 15 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 16 C -0.12 -1.24 5.60 -26.40 -0.15 -1.39 16 17 C -0.07 -0.57 7.38 37.52 0.28 -0.30 16 18 S -0.29 -3.20 23.23 -107.50 -2.50 -5.69 16 19 C -0.05 -0.61 6.81 38.30 0.26 -0.35 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 24 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 25 H 0.09 1.07 6.87 -51.93 -0.36 0.72 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.10 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 272.31 15.07 4.10 4.10 Total: -1.00 -30.29 272.31 -7.46 -37.75 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.12 Total: -3.48 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 0.02 Total: -6.58 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.68 Total: -16.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.50 Total: -5.69 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.29 -7.46 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308152669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.679 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds