Wall clock time and date at job start Sun Mar 29 2020 21:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 O 1.45194 * 109.47297 * 179.97438 * 10 9 7 12 12 C 1.34226 * 117.00260 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00089 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00481 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.59597 * 300.32503 * 14 12 11 16 16 C 1.52940 * 109.60713 * 179.97438 * 14 12 11 17 17 C 1.53705 * 112.48893 * 209.96603 * 16 14 12 18 18 S 1.83389 * 104.97333 * 2.82668 * 17 16 14 19 19 C 1.55154 * 109.60431 * 60.45887 * 14 12 11 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08996 * 108.88489 * 330.75923 * 16 14 12 26 26 H 1.09003 * 108.88559 * 89.17079 * 16 14 12 27 27 H 1.09000 * 110.33863 * 121.70304 * 17 16 14 28 28 H 1.09004 * 110.34134 * 243.94668 * 17 16 14 29 29 H 1.09004 * 111.13450 * 279.28332 * 19 14 12 30 30 H 1.08993 * 111.13195 * 43.46125 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 8 1.5195 -4.9194 0.0167 12 6 2.2506 -6.0451 0.0222 13 8 3.4573 -5.9819 0.0223 14 6 1.5666 -7.3879 0.0284 15 1 0.9384 -7.4741 0.9150 16 6 2.6174 -8.4991 0.0333 17 6 2.1273 -9.7748 -0.6703 18 16 0.4585 -9.3549 -1.3044 19 6 0.6885 -7.5307 -1.2428 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 3.5135 -8.1395 -0.4722 26 1 2.8708 -8.7406 1.0656 27 1 2.7923 -10.0321 -1.4947 28 1 2.0664 -10.5996 0.0398 29 1 -0.2659 -7.0185 -1.1207 30 1 1.2152 -7.1708 -2.1266 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308152669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:33 Heat of formation + Delta-G solvation = -123.316754 kcal Electronic energy + Delta-G solvation = -13717.010702 eV Core-core repulsion = 11216.150621 eV Total energy + Delta-G solvation = -2500.860081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.68605 -38.13996 -36.63475 -35.46001 -32.43002 -30.94004 -27.41677 -26.51749 -23.93017 -22.73955 -21.00448 -19.14101 -18.35003 -17.99060 -17.65226 -17.03322 -16.55141 -16.11612 -15.15340 -14.81158 -14.70447 -14.39437 -13.95621 -13.33673 -13.11413 -13.06183 -12.94614 -12.78913 -12.58403 -12.52478 -11.99154 -11.85692 -11.62247 -11.50065 -11.45167 -10.88994 -10.61397 -8.80042 -8.27556 -6.41050 0.69281 0.99872 1.30313 1.40983 1.44391 1.52087 1.69378 2.39600 3.07034 3.32111 3.51360 3.63910 3.91094 4.03898 4.10110 4.20404 4.25000 4.46251 4.59143 4.67826 4.78081 4.90849 5.01308 5.24450 5.45501 5.51076 5.72804 6.05374 6.63072 6.72835 7.29008 8.84699 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.064470 B = 0.004584 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.206850 B = 6106.878936 C = 6428.465452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.360 6.360 12 C 0.465 3.535 13 O -0.535 6.535 14 C -0.078 4.078 15 H 0.140 0.860 16 C -0.121 4.121 17 C -0.054 4.054 18 S -0.311 6.311 19 C -0.054 4.054 20 H 0.268 0.732 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -17.559 -0.354 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.007 4.007 10 C 0.017 3.983 11 O -0.276 6.276 12 C 0.307 3.693 13 O -0.425 6.425 14 C -0.099 4.099 15 H 0.158 0.842 16 C -0.159 4.159 17 C -0.202 4.202 18 S -0.085 6.085 19 C -0.202 4.202 20 H 0.077 0.923 21 H 0.025 0.975 22 H 0.026 0.974 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.414 -18.112 -0.713 18.286 hybrid contribution 1.206 1.832 0.298 2.214 sum 3.620 -16.280 -0.415 16.683 Atomic orbital electron populations 1.70081 1.07807 1.28358 1.50274 1.25940 0.95809 1.03356 0.94031 0.85396 0.78212 0.77519 0.79307 1.19066 1.20510 1.19062 1.21350 0.93707 0.91279 1.52681 0.91690 1.18982 0.94355 0.90594 0.96758 1.23188 0.95050 0.79015 1.01070 1.86518 1.42517 1.15768 1.82820 1.24018 0.86267 0.87462 0.71526 1.90622 1.16801 1.88344 1.46749 1.22124 0.97823 0.87600 1.02323 0.84180 1.21892 0.97968 0.91579 1.04479 1.24016 0.92699 1.00155 1.03293 1.88020 1.24823 1.07358 1.88263 1.24284 1.03759 0.93680 0.98505 0.92322 0.97473 0.97447 0.92114 0.92100 0.90147 0.87723 0.87719 0.85654 0.85747 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 43.13 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.03 1.60 5.35 29.85 0.16 1.76 16 10 C 0.09 3.93 5.40 71.98 0.39 4.32 16 11 O -0.36 -13.69 10.17 -51.38 -0.52 -14.21 16 12 C 0.46 14.79 7.23 71.24 0.52 15.30 16 13 O -0.54 -19.51 15.13 21.94 0.33 -19.18 16 14 C -0.08 -1.71 3.00 -10.82 -0.03 -1.74 16 15 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 16 C -0.12 -2.13 5.60 30.81 0.17 -1.95 16 17 C -0.05 -0.77 7.38 72.22 0.53 -0.24 16 18 S -0.31 -6.28 23.23 -56.49 -1.31 -7.59 16 19 C -0.05 -1.16 6.81 72.72 0.49 -0.67 16 20 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 21 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 23 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 24 H 0.06 2.62 8.13 -2.38 -0.02 2.61 16 25 H 0.08 1.69 6.87 -2.39 -0.02 1.67 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.12 2.62 8.14 -2.38 -0.02 2.61 16 30 H 0.09 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -64.58 272.31 4.85 -59.73 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.12 Total: 3.86 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 2.93 Total: -13.05 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.72 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.19 Total: -33.39 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -1.31 Total: -7.59 kcal Total: -64.58 4.85 -59.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308152669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.589 kcal (2) G-P(sol) polarization free energy of solvation -64.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds