Wall clock time and date at job start Sun Mar 29 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 H 1.08995 * 108.82833 * 61.47340 * 14 12 11 16 16 C 1.52339 * 108.86395 * 180.02562 * 14 12 11 17 17 C 1.54256 * 112.58743 * 120.82008 * 16 14 12 18 18 S 1.83949 * 102.58134 * 24.52696 * 17 16 14 19 19 C 1.54256 * 108.86864 * 303.07576 * 14 12 11 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.09003 * 108.86375 * 241.64234 * 16 14 12 26 26 H 1.08997 * 108.86769 * 359.97438 * 16 14 12 27 27 H 1.09004 * 110.78483 * 142.79826 * 17 16 14 28 28 H 1.08993 * 110.78654 * 266.24979 * 17 16 14 29 29 H 1.08993 * 110.79229 * 332.92892 * 19 14 12 30 30 H 1.09004 * 110.78671 * 96.38441 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 1 0.9679 -7.4779 -0.9062 16 6 2.6271 -8.4814 0.0016 17 6 2.5150 -9.4143 1.2250 18 16 0.7456 -9.2437 1.6982 19 6 0.6296 -7.4706 1.2232 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8906 25 1 2.5215 -9.0758 -0.9060 26 1 3.6128 -8.0161 0.0017 27 1 2.7441 -10.4435 0.9488 28 1 3.1655 -9.0750 2.0310 29 1 0.9878 -6.8300 2.0289 30 1 -0.3921 -7.2107 0.9461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308152670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:35 Heat of formation + Delta-G solvation = -108.602535 kcal Electronic energy + Delta-G solvation = -13793.038249 eV Core-core repulsion = 11292.816224 eV Total energy + Delta-G solvation = -2500.222025 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.43490 -36.87829 -35.52505 -33.75147 -30.61269 -29.73432 -26.06921 -24.67889 -22.69689 -21.28914 -19.76199 -17.87295 -17.05823 -16.70524 -16.38544 -15.96602 -15.07322 -14.27298 -13.85804 -13.71120 -13.41865 -13.16850 -12.28120 -12.14737 -12.09935 -11.82827 -11.68957 -11.40078 -11.16293 -10.74583 -10.69323 -10.21827 -10.08772 -9.87696 -9.83755 -8.78762 -8.44822 -7.98474 -6.50315 -4.21747 1.57854 1.95639 2.34052 2.92002 3.38979 3.42189 3.58183 4.15918 4.42420 4.46833 4.60509 4.74177 4.83017 5.10256 5.27685 5.28513 5.35661 5.51004 5.68430 5.80580 5.88373 5.89287 6.40664 6.73874 7.21591 7.26650 7.90357 8.03097 8.30212 8.72003 9.51004 10.91132 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.062206 B = 0.004680 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.006578 B = 5981.384569 C = 6265.847997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.609 4.609 8 H 0.053 0.947 9 C 0.011 3.989 10 C 0.081 3.919 11 O -0.355 6.355 12 C 0.460 3.540 13 O -0.511 6.511 14 C -0.086 4.086 15 H 0.121 0.879 16 C -0.132 4.132 17 C -0.062 4.062 18 S -0.296 6.296 19 C -0.052 4.052 20 H 0.271 0.729 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -16.939 0.721 17.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.184 4.184 3 Si 0.903 3.097 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.647 4.647 8 H 0.072 0.928 9 C -0.026 4.026 10 C 0.009 3.991 11 O -0.271 6.271 12 C 0.301 3.699 13 O -0.400 6.400 14 C -0.107 4.107 15 H 0.138 0.862 16 C -0.170 4.170 17 C -0.210 4.210 18 S -0.069 6.069 19 C -0.200 4.200 20 H 0.081 0.919 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.202 -16.026 1.195 16.221 hybrid contribution 1.121 -0.837 -0.464 1.474 sum 3.323 -16.863 0.731 17.203 Atomic orbital electron populations 1.70752 1.06879 1.30848 1.45701 1.25903 0.96474 1.02746 0.93324 0.83447 0.74626 0.74673 0.76931 1.21248 1.21333 1.20787 1.21846 0.94501 0.91085 1.57252 0.92837 1.19308 0.94845 0.90774 0.97634 1.23514 0.96040 0.78295 1.01283 1.86517 1.42361 1.15805 1.82380 1.23362 0.86520 0.87328 0.72695 1.90602 1.15745 1.87788 1.45890 1.21641 0.96983 0.90124 1.01915 0.86152 1.22093 1.01085 0.95218 0.98624 1.24161 0.93632 1.03304 0.99932 1.88015 1.16596 1.15122 1.87148 1.24101 1.03489 0.94073 0.98364 0.91873 0.96202 0.96205 0.92018 0.92029 0.89596 0.87511 0.87327 0.88968 0.88462 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.32 13.65 55.43 0.76 -26.57 16 2 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 3 Si 1.08 24.88 29.90 -169.99 -5.08 19.80 16 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.17 9.11 -34.44 -0.31 -17.48 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.29 4.66 -27.88 -0.13 0.16 16 10 C 0.08 1.77 5.40 37.16 0.20 1.97 16 11 O -0.35 -6.71 10.08 -39.27 -0.40 -7.10 16 12 C 0.46 7.45 7.08 36.01 0.26 7.71 16 13 O -0.51 -9.45 14.79 -18.75 -0.28 -9.72 16 14 C -0.09 -1.00 3.08 -91.45 -0.28 -1.28 16 15 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.13 -1.32 5.94 -26.41 -0.16 -1.47 16 17 C -0.06 -0.57 7.46 37.81 0.28 -0.28 16 18 S -0.30 -3.30 23.27 -107.50 -2.50 -5.80 16 19 C -0.05 -0.59 6.80 37.81 0.26 -0.33 16 20 H 0.27 8.12 7.22 -40.82 -0.29 7.82 16 21 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 22 H 0.02 0.52 8.01 -51.93 -0.42 0.11 16 23 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 24 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.24 6.13 -51.93 -0.32 0.92 16 27 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 269.94 15.07 4.07 4.07 Total: -1.00 -31.10 269.94 -7.43 -38.53 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.01 Total: -2.67 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 0.02 Total: -10.53 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.76 Total: -26.57 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.67 Total: -16.83 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.50 Total: -5.80 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.10 -7.43 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308152670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.073 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds