Wall clock time and date at job start Sun Mar 29 2020 21:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 H 1.08995 * 108.82833 * 61.47340 * 14 12 11 16 16 C 1.52339 * 108.86395 * 180.02562 * 14 12 11 17 17 C 1.54256 * 112.58743 * 120.82008 * 16 14 12 18 18 S 1.83949 * 102.58134 * 24.52696 * 17 16 14 19 19 C 1.54256 * 108.86864 * 303.07576 * 14 12 11 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 22 22 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 23 23 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 24 24 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 25 25 H 1.09003 * 108.86375 * 241.64234 * 16 14 12 26 26 H 1.08997 * 108.86769 * 359.97438 * 16 14 12 27 27 H 1.09004 * 110.78483 * 142.79826 * 17 16 14 28 28 H 1.08993 * 110.78654 * 266.24979 * 17 16 14 29 29 H 1.08993 * 110.79229 * 332.92892 * 19 14 12 30 30 H 1.09004 * 110.78671 * 96.38441 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 1 0.9679 -7.4779 -0.9062 16 6 2.6271 -8.4814 0.0016 17 6 2.5150 -9.4143 1.2250 18 16 0.7456 -9.2437 1.6982 19 6 0.6296 -7.4706 1.2232 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6247 -2.5571 -0.8897 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8906 25 1 2.5215 -9.0758 -0.9060 26 1 3.6128 -8.0161 0.0017 27 1 2.7441 -10.4435 0.9488 28 1 3.1655 -9.0750 2.0310 29 1 0.9878 -6.8300 2.0289 30 1 -0.3921 -7.2107 0.9461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308152670.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:35 Heat of formation + Delta-G solvation = -126.242572 kcal Electronic energy + Delta-G solvation = -13793.803178 eV Core-core repulsion = 11292.816224 eV Total energy + Delta-G solvation = -2500.986954 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.81766 -38.27481 -36.63963 -35.85191 -32.26926 -30.93751 -27.22555 -26.44519 -24.14599 -23.04091 -20.89946 -19.30145 -18.63137 -18.20289 -17.76174 -17.19396 -16.17436 -15.68014 -15.44346 -15.20120 -14.74059 -14.44324 -13.95279 -13.74026 -13.26998 -12.97152 -12.86361 -12.82389 -12.52390 -12.22223 -12.06429 -11.90656 -11.73808 -11.62929 -10.98344 -10.81863 -10.61454 -8.85678 -8.78378 -6.51172 0.70509 0.94271 1.22899 1.51529 1.59299 1.62067 1.80565 2.53792 3.08583 3.26421 3.41248 3.68260 3.82412 4.03002 4.04542 4.06872 4.11978 4.44506 4.50395 4.54850 4.72097 4.92153 4.96073 5.00643 5.17453 5.43885 5.80072 6.05943 6.44181 6.54777 7.31020 8.63681 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.062206 B = 0.004680 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.006578 B = 5981.384569 C = 6265.847997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.030 4.030 3 Si 1.124 2.876 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.280 1.280 7 C -0.627 4.627 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.096 3.904 11 O -0.361 6.361 12 C 0.459 3.541 13 O -0.533 6.533 14 C -0.076 4.076 15 H 0.144 0.856 16 C -0.129 4.129 17 C -0.053 4.053 18 S -0.313 6.313 19 C -0.052 4.052 20 H 0.258 0.742 21 H 0.005 0.995 22 H 0.005 0.995 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.134 0.866 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 -17.852 0.470 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.229 4.229 3 Si 0.944 3.056 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.664 4.664 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.023 3.977 11 O -0.277 6.277 12 C 0.302 3.698 13 O -0.423 6.423 14 C -0.097 4.097 15 H 0.162 0.838 16 C -0.167 4.167 17 C -0.201 4.201 18 S -0.087 6.087 19 C -0.200 4.200 20 H 0.068 0.932 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.130 0.870 26 H 0.110 0.890 27 H 0.153 0.847 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.027 -16.983 0.951 17.277 hybrid contribution 0.869 -0.670 -0.373 1.158 sum 3.896 -17.653 0.578 18.087 Atomic orbital electron populations 1.70882 1.07912 1.30173 1.47659 1.27490 0.96523 1.06731 0.92118 0.82851 0.74120 0.70625 0.77999 1.19574 1.19331 1.20503 1.22249 0.94920 0.92407 1.56853 0.92593 1.19158 0.95072 0.91978 0.96103 1.22997 0.94696 0.78896 1.01104 1.86509 1.42476 1.15716 1.82995 1.24295 0.86449 0.87723 0.71345 1.90598 1.16874 1.88054 1.46820 1.21863 0.97398 0.87326 1.03102 0.83815 1.22112 0.99410 0.94930 1.00286 1.24258 0.91795 1.04594 0.99439 1.88121 1.18589 1.14510 1.87441 1.24077 1.03899 0.94253 0.97805 0.93209 0.97704 0.97653 0.92093 0.92213 0.87011 0.89008 0.84740 0.89008 0.89732 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.65 21.45 0.29 -56.43 16 2 C -0.03 -1.72 5.46 84.65 0.46 -1.26 16 3 Si 1.12 49.23 29.90 68.60 2.05 51.29 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.63 -35.55 9.11 25.60 0.23 -35.32 16 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 9 C 0.01 0.73 4.66 29.85 0.14 0.87 16 10 C 0.10 4.23 5.40 71.98 0.39 4.62 16 11 O -0.36 -13.56 10.08 -51.44 -0.52 -14.08 16 12 C 0.46 14.47 7.08 71.24 0.50 14.97 16 13 O -0.53 -19.35 14.79 21.98 0.32 -19.03 16 14 C -0.08 -1.63 3.08 -11.33 -0.03 -1.66 16 15 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 16 C -0.13 -2.25 5.94 30.80 0.18 -2.06 16 17 C -0.05 -0.83 7.46 72.41 0.54 -0.29 16 18 S -0.31 -6.40 23.27 -56.49 -1.31 -7.71 16 19 C -0.05 -1.11 6.80 72.41 0.49 -0.62 16 20 H 0.26 15.93 7.22 -92.71 -0.67 15.26 16 21 H 0.00 0.25 8.01 -2.39 -0.02 0.24 16 22 H 0.01 0.28 8.01 -2.38 -0.02 0.26 16 23 H 0.06 2.66 8.13 -2.39 -0.02 2.64 16 24 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.97 6.13 -2.39 -0.01 1.95 16 27 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 30 H 0.13 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -66.46 269.94 4.97 -61.50 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.22 Total: 5.22 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 2.91 Total: -20.75 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.29 Total: -56.43 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.19 Total: -33.11 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.05 Total: 51.29 kcal Atomic # 16 Polarization: -6.40 SS G_CDS: -1.31 Total: -7.71 kcal Total: -66.46 4.97 -61.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308152670.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.746 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds