Wall clock time and date at job start Sun Mar 29 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00088 * 2 1 4 4 C 1.50702 * 115.54855 * 65.10999 * 3 2 1 5 5 O 1.20828 * 119.99777 * 225.80467 * 4 3 2 6 6 O 1.34219 * 120.00006 * 45.53045 * 4 3 2 7 7 C 1.45202 * 117.00299 * 180.27179 * 6 4 3 8 8 C 1.52994 * 109.47699 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47647 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99741 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00342 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00412 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99870 * 359.97438 * 11 9 8 14 14 H 1.48509 * 109.46975 * 90.00652 * 13 11 9 15 15 H 1.48506 * 109.47214 * 210.00064 * 13 11 9 16 16 H 1.48494 * 109.47483 * 330.00437 * 13 11 9 17 17 C 1.52996 * 117.50165 * 210.78272 * 3 2 1 18 18 C 1.53004 * 117.49861 * 279.44485 * 3 2 1 19 19 H 1.09004 * 109.47221 * 183.39611 * 1 2 3 20 20 H 1.08998 * 109.47059 * 303.39721 * 1 2 3 21 21 H 1.09004 * 109.47264 * 63.40048 * 1 2 3 22 22 H 1.09002 * 109.47249 * 300.00510 * 7 6 4 23 23 H 1.09006 * 109.46862 * 59.99701 * 7 6 4 24 24 H 1.09002 * 109.47204 * 300.00560 * 8 7 6 25 25 H 1.09006 * 109.47189 * 59.99924 * 8 7 6 26 26 H 0.96995 * 120.00386 * 179.97438 * 12 11 9 27 27 H 1.08996 * 117.50239 * 215.00430 * 17 3 2 28 28 H 1.09005 * 117.49701 * 0.02562 * 17 3 2 29 29 H 1.08997 * 117.49509 * 359.97102 * 18 3 2 30 30 H 1.08998 * 117.49979 * 144.99864 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8107 2.5295 1.2334 5 8 1.2598 3.5995 1.1266 6 8 2.0514 2.0170 2.4503 7 6 1.6224 2.8030 3.5933 8 6 1.9786 2.0628 4.8840 9 6 1.5328 2.8783 6.0703 10 1 1.0447 3.8297 5.9188 11 6 1.7491 2.4104 7.3490 12 7 1.3605 3.1223 8.3843 13 14 2.5941 0.7652 7.6111 14 1 4.0617 0.9720 7.7055 15 1 2.0991 0.1493 8.8685 16 1 2.2933 -0.1335 6.4679 17 6 3.5170 2.1936 -0.6945 18 6 2.1640 2.5059 -1.3388 19 1 -0.3634 -1.0259 0.0609 20 1 -0.3633 0.5657 0.8580 21 1 -0.3634 0.4601 -0.9189 22 1 2.1248 3.7703 3.5783 23 1 0.5438 2.9531 3.5468 24 1 1.4759 1.0957 4.8988 25 1 3.0572 1.9123 4.9308 26 1 1.5124 2.7930 9.2839 27 1 4.0715 3.0250 -0.2594 28 1 4.1236 1.4118 -1.1519 29 1 1.8810 1.9295 -2.2195 30 1 1.8284 3.5429 -1.3274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308189684.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:07 Heat of formation + Delta-G solvation = -64.117580 kcal Electronic energy + Delta-G solvation = -13826.082472 eV Core-core repulsion = 11327.789460 eV Total energy + Delta-G solvation = -2498.293012 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.30105 -37.26149 -35.81865 -33.31948 -30.80156 -29.04141 -26.26231 -24.22963 -22.81814 -20.74074 -20.40788 -18.23359 -16.98902 -16.28705 -16.15411 -15.70615 -14.86425 -14.22005 -13.88596 -13.60157 -13.46982 -13.23199 -12.71602 -12.38276 -11.95190 -11.63507 -11.50073 -11.30203 -10.90010 -10.83561 -10.70808 -10.18416 -9.96871 -9.85005 -9.73264 -9.36000 -8.63002 -7.80529 -6.13823 -4.15308 1.32523 2.00351 2.56067 2.85349 3.28375 3.35665 3.40565 3.41359 4.25750 4.38591 4.47042 4.79645 5.02218 5.05131 5.19921 5.26458 5.30541 5.52179 5.61745 5.77086 5.90697 5.92147 6.41395 6.70728 7.15451 7.20958 7.60970 8.02263 8.38329 8.87212 9.45777 10.98662 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.036976 B = 0.006111 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.074115 B = 4580.657811 C = 4879.234805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.159 6.159 3 C -0.140 4.140 4 C 0.492 3.508 5 O -0.507 6.507 6 O -0.342 6.342 7 C 0.081 3.919 8 C -0.008 4.008 9 C -0.528 4.528 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.897 5.897 13 Si 0.880 3.120 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.262 1.262 17 C -0.112 4.112 18 C -0.127 4.127 19 H 0.106 0.894 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.029 0.971 25 H 0.025 0.975 26 H 0.266 0.734 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -5.621 -19.519 20.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.070 5.930 3 C -0.251 4.251 4 C 0.332 3.668 5 O -0.397 6.397 6 O -0.257 6.257 7 C 0.009 3.991 8 C -0.046 4.046 9 C -0.566 4.566 10 H 0.093 0.907 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.707 3.293 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.186 1.186 17 C -0.150 4.150 18 C -0.166 4.166 19 H 0.124 0.876 20 H 0.098 0.902 21 H 0.097 0.903 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.346 -6.215 -19.270 20.383 hybrid contribution -0.568 0.358 0.544 0.864 sum 1.778 -5.857 -18.726 19.701 Atomic orbital electron populations 1.23502 0.94593 1.06724 1.05428 1.86480 1.07020 1.02236 1.97277 1.23065 1.11371 0.96868 0.93821 1.22071 0.76061 0.83637 0.85014 1.90648 1.39403 1.22010 1.87589 1.86531 1.73704 1.51014 1.14446 1.23459 0.99481 0.94361 0.81814 1.19617 0.97663 0.97067 0.90208 1.20831 1.40259 1.06725 0.88801 0.90693 1.24922 0.94929 0.97358 0.95714 1.69892 1.46819 1.38255 0.98537 0.86764 0.80140 0.84424 0.78004 1.20008 1.21134 1.18625 1.23071 0.89369 1.03079 0.99466 1.23413 0.99346 1.02018 0.91872 0.87551 0.90170 0.90251 0.91669 0.91740 0.95248 0.95701 0.92411 0.86962 0.86406 0.86534 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 10.73 101.05 1.08 -0.35 16 2 S -0.16 -2.03 22.19 -107.50 -2.39 -4.41 16 3 C -0.14 -1.87 2.48 -91.77 -0.23 -2.10 16 4 C 0.49 8.69 7.37 36.01 0.27 8.95 16 5 O -0.51 -9.93 16.07 -18.75 -0.30 -10.23 16 6 O -0.34 -6.80 10.11 -39.23 -0.40 -7.20 16 7 C 0.08 1.78 5.40 37.15 0.20 1.98 16 8 C -0.01 -0.20 4.42 -27.89 -0.12 -0.32 16 9 C -0.53 -15.14 9.66 -34.44 -0.33 -15.48 16 10 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 13 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 17 C -0.11 -1.13 10.00 -26.69 -0.27 -1.39 16 18 C -0.13 -1.26 9.81 -26.69 -0.26 -1.52 16 19 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 20 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 21 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 22 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 23 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 24 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 25 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.11 1.20 7.72 -51.93 -0.40 0.80 16 LS Contribution 279.81 15.07 4.22 4.22 Total: -1.00 -31.94 279.81 -6.66 -38.59 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.13 Total: -3.01 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 0.24 Total: -8.21 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.70 Total: -17.43 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.39 Total: -4.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.94 -6.66 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189684.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.524 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds