Wall clock time and date at job start Sun Mar 29 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81395 * 103.00088 * 2 1 4 4 C 1.50702 * 115.54855 * 65.10999 * 3 2 1 5 5 O 1.20828 * 119.99777 * 225.80467 * 4 3 2 6 6 O 1.34219 * 120.00006 * 45.53045 * 4 3 2 7 7 C 1.45202 * 117.00299 * 180.27179 * 6 4 3 8 8 C 1.52994 * 109.47699 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47647 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99741 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00342 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00412 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99870 * 359.97438 * 11 9 8 14 14 H 1.48509 * 109.46975 * 90.00652 * 13 11 9 15 15 H 1.48506 * 109.47214 * 210.00064 * 13 11 9 16 16 H 1.48494 * 109.47483 * 330.00437 * 13 11 9 17 17 C 1.52996 * 117.50165 * 210.78272 * 3 2 1 18 18 C 1.53004 * 117.49861 * 279.44485 * 3 2 1 19 19 H 1.09004 * 109.47221 * 183.39611 * 1 2 3 20 20 H 1.08998 * 109.47059 * 303.39721 * 1 2 3 21 21 H 1.09004 * 109.47264 * 63.40048 * 1 2 3 22 22 H 1.09002 * 109.47249 * 300.00510 * 7 6 4 23 23 H 1.09006 * 109.46862 * 59.99701 * 7 6 4 24 24 H 1.09002 * 109.47204 * 300.00560 * 8 7 6 25 25 H 1.09006 * 109.47189 * 59.99924 * 8 7 6 26 26 H 0.96995 * 120.00386 * 179.97438 * 12 11 9 27 27 H 1.08996 * 117.50239 * 215.00430 * 17 3 2 28 28 H 1.09005 * 117.49701 * 0.02562 * 17 3 2 29 29 H 1.08997 * 117.49509 * 359.97102 * 18 3 2 30 30 H 1.08998 * 117.49979 * 144.99864 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8107 2.5295 1.2334 5 8 1.2598 3.5995 1.1266 6 8 2.0514 2.0170 2.4503 7 6 1.6224 2.8030 3.5933 8 6 1.9786 2.0628 4.8840 9 6 1.5328 2.8783 6.0703 10 1 1.0447 3.8297 5.9188 11 6 1.7491 2.4104 7.3490 12 7 1.3605 3.1223 8.3843 13 14 2.5941 0.7652 7.6111 14 1 4.0617 0.9720 7.7055 15 1 2.0991 0.1493 8.8685 16 1 2.2933 -0.1335 6.4679 17 6 3.5170 2.1936 -0.6945 18 6 2.1640 2.5059 -1.3388 19 1 -0.3634 -1.0259 0.0609 20 1 -0.3633 0.5657 0.8580 21 1 -0.3634 0.4601 -0.9189 22 1 2.1248 3.7703 3.5783 23 1 0.5438 2.9531 3.5468 24 1 1.4759 1.0957 4.8988 25 1 3.0572 1.9123 4.9308 26 1 1.5124 2.7930 9.2839 27 1 4.0715 3.0250 -0.2594 28 1 4.1236 1.4118 -1.1519 29 1 1.8810 1.9295 -2.2195 30 1 1.8284 3.5429 -1.3274 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308189684.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:07 Heat of formation + Delta-G solvation = -83.173377 kcal Electronic energy + Delta-G solvation = -13826.908793 eV Core-core repulsion = 11327.789460 eV Total energy + Delta-G solvation = -2499.119334 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.72224 -38.49021 -37.13646 -35.43638 -32.84616 -29.88105 -27.92814 -25.80267 -23.59596 -22.68911 -21.71622 -19.62578 -18.87716 -17.84967 -17.63229 -16.81555 -16.34383 -15.79152 -15.25376 -15.07390 -14.64899 -14.41571 -14.24658 -13.66388 -13.37715 -13.17315 -12.78656 -12.58446 -12.53906 -12.37139 -11.85942 -11.82587 -11.70459 -11.58739 -11.50780 -10.92610 -10.84035 -8.76464 -8.37326 -6.45881 0.33188 0.90576 1.36391 1.37616 1.40262 1.51086 1.58074 2.32134 2.48673 2.97473 3.30977 3.47093 3.70368 4.08183 4.10147 4.19431 4.26808 4.40215 4.55206 4.56349 4.78145 4.80659 4.97655 5.03782 5.23143 5.40019 5.47442 6.11934 6.53843 6.59777 7.19517 8.78686 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.036976 B = 0.006111 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.074115 B = 4580.657811 C = 4879.234805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.170 6.170 3 C -0.167 4.167 4 C 0.488 3.512 5 O -0.533 6.533 6 O -0.347 6.347 7 C 0.093 3.907 8 C -0.001 4.001 9 C -0.544 4.544 10 H 0.036 0.964 11 C 0.015 3.985 12 N -0.943 5.943 13 Si 0.951 3.049 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.246 1.246 17 C -0.097 4.097 18 C -0.106 4.106 19 H 0.125 0.875 20 H 0.057 0.943 21 H 0.098 0.902 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -7.578 -21.402 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.059 5.941 3 C -0.278 4.278 4 C 0.330 3.670 5 O -0.424 6.424 6 O -0.263 6.263 7 C 0.020 3.980 8 C -0.039 4.039 9 C -0.582 4.582 10 H 0.054 0.946 11 C -0.183 4.183 12 N -0.582 5.582 13 Si 0.774 3.226 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.170 1.170 17 C -0.135 4.135 18 C -0.145 4.145 19 H 0.143 0.857 20 H 0.076 0.924 21 H 0.116 0.884 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.161 0.839 29 H 0.164 0.836 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.411 -8.169 -21.182 22.958 hybrid contribution -0.959 1.057 1.078 1.789 sum 2.452 -7.111 -20.104 21.466 Atomic orbital electron populations 1.23583 0.93215 1.07816 1.05397 1.86468 1.08658 1.01778 1.97196 1.23180 1.14766 0.97048 0.92767 1.23001 0.75114 0.83662 0.85196 1.90630 1.40544 1.23395 1.87785 1.86515 1.74009 1.50804 1.14968 1.23013 0.98887 0.93914 0.82226 1.19439 0.97925 0.96605 0.89884 1.21085 1.40195 1.05987 0.90889 0.94580 1.25910 0.95539 1.01721 0.95164 1.70030 1.48281 1.40583 0.99297 0.85642 0.79279 0.79147 0.78576 1.18695 1.20342 1.16962 1.23316 0.88969 1.03430 0.97824 1.23578 0.98716 1.01553 0.90677 0.85656 0.92369 0.88357 0.92286 0.92539 0.94764 0.94800 0.91957 0.86962 0.83912 0.83644 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 10.73 113.37 1.22 -1.36 16 2 S -0.17 -3.95 22.19 -56.49 -1.25 -5.21 16 3 C -0.17 -4.12 2.48 -11.54 -0.03 -4.14 16 4 C 0.49 16.96 7.37 71.24 0.53 17.48 16 5 O -0.53 -20.92 16.07 21.96 0.35 -20.56 16 6 O -0.35 -13.69 10.11 -51.31 -0.52 -14.20 16 7 C 0.09 4.12 5.40 71.98 0.39 4.51 16 8 C 0.00 -0.05 4.42 29.85 0.13 0.08 16 9 C -0.54 -31.89 9.66 25.60 0.25 -31.64 16 10 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 11 C 0.02 0.88 5.47 84.65 0.46 1.34 16 12 N -0.94 -58.83 13.96 21.44 0.30 -58.53 16 13 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 17 C -0.10 -1.68 10.00 30.62 0.31 -1.38 16 18 C -0.11 -1.80 9.81 30.62 0.30 -1.50 16 19 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 23 H 0.06 2.55 8.13 -2.38 -0.02 2.53 16 24 H 0.03 1.64 7.20 -2.39 -0.02 1.62 16 25 H 0.03 1.59 7.57 -2.38 -0.02 1.57 16 26 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.14 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 2.03 7.72 -2.39 -0.02 2.02 16 Total: -1.00 -69.64 279.81 5.38 -64.27 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.06 Total: 5.04 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 3.55 Total: -16.62 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.30 Total: -58.53 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.17 Total: -34.77 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -1.25 Total: -5.21 kcal Total: -69.64 5.38 -64.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308189684.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.906 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds