Wall clock time and date at job start Sun Mar 29 2020 21:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86793 * 120.00142 * 2 1 4 4 H 1.48499 * 109.47365 * 270.00108 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99854 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99949 * 3 2 1 7 7 C 1.38756 * 119.99474 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99348 * 180.02562 * 7 2 1 9 9 O 1.34912 * 120.00400 * 0.02562 * 7 2 1 10 10 C 1.34314 * 117.00123 * 179.97438 * 9 7 2 11 11 O 1.21212 * 119.99919 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00115 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47128 * 180.02562 * 12 10 9 14 14 C 1.35046 * 126.03945 * 125.00073 * 13 12 10 15 15 C 1.35367 * 107.72856 * 179.97438 * 14 13 12 16 16 Cl 1.73600 * 126.04587 * 179.97438 * 15 14 13 17 17 C 1.39927 * 107.91073 * 0.02562 * 15 14 13 18 18 N 1.30851 * 108.21117 * 359.75518 * 17 15 14 19 19 H 0.97005 * 119.99363 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46932 * 300.00352 * 12 10 9 21 21 H 1.08997 * 109.47392 * 59.99690 * 12 10 9 22 22 H 1.07998 * 126.13424 * 359.93851 * 14 13 12 23 23 H 1.07995 * 125.89697 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4960 2.0464 -1.4000 5 1 1.4460 2.6526 0.7000 6 1 3.5461 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4332 0.0001 12 6 1.3809 -4.8393 0.0011 13 7 2.3898 -5.9015 0.0016 14 6 2.4828 -6.9085 0.8966 15 6 3.5444 -7.6728 0.5482 16 17 4.0955 -9.0947 1.3778 17 6 4.1198 -7.1133 -0.5980 18 7 3.4255 -6.0547 -0.9290 19 1 -0.4849 0.8401 -0.0004 20 1 0.7583 -4.9295 0.8914 21 1 0.7577 -4.9300 -0.8885 22 1 1.8281 -7.0741 1.7394 23 1 4.9847 -7.4925 -1.1219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308190255.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:57 Heat of formation + Delta-G solvation = -23.548625 kcal Electronic energy + Delta-G solvation = -13276.277428 eV Core-core repulsion = 10538.326474 eV Total energy + Delta-G solvation = -2737.950955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 230.024 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.34003 -40.92099 -37.48854 -37.24668 -34.47420 -34.22849 -31.12486 -29.15004 -27.14068 -23.30109 -22.21397 -21.57280 -19.93554 -18.71332 -18.35818 -17.10634 -16.71481 -16.22673 -15.81301 -15.40917 -15.23073 -14.35139 -14.21724 -13.82647 -13.63560 -13.06312 -12.68303 -12.41434 -12.32868 -12.20104 -12.07188 -11.47799 -11.25970 -10.72977 -10.58257 -9.44745 -8.57950 -6.37648 0.65294 0.94371 1.25170 1.33859 1.49721 1.57217 1.62754 1.75267 2.09257 2.60011 2.93323 3.64008 3.82991 4.01787 4.15388 4.43978 4.60706 4.60925 5.11785 5.35920 5.76096 5.79022 6.53763 6.60543 6.87342 7.65886 8.61856 Molecular weight = 230.02amu Principal moments of inertia in cm(-1) A = 0.072981 B = 0.005138 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.569109 B = 5448.732918 C = 5587.399821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 1.015 2.985 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.267 1.267 7 C -0.420 4.420 8 H 0.077 0.923 9 O -0.237 6.237 10 C 0.380 3.620 11 O -0.566 6.566 12 C 0.162 3.838 13 N -0.363 5.363 14 C 0.083 3.917 15 C -0.198 4.198 16 Cl -0.033 7.033 17 C 0.055 3.945 18 N -0.307 5.307 19 H 0.280 0.720 20 H 0.176 0.824 21 H 0.142 0.858 22 H 0.224 0.776 23 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -13.596 2.671 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.199 4.199 3 Si 0.834 3.166 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.094 0.906 9 O -0.145 6.145 10 C 0.226 3.774 11 O -0.462 6.462 12 C 0.040 3.960 13 N -0.145 5.145 14 C -0.063 4.063 15 C -0.237 4.237 16 Cl -0.005 7.005 17 C -0.133 4.133 18 N -0.127 5.127 19 H 0.090 0.910 20 H 0.193 0.807 21 H 0.159 0.841 22 H 0.241 0.759 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 1.465 -12.452 1.914 12.683 hybrid contribution 0.660 -0.003 0.522 0.841 sum 2.125 -12.455 2.436 12.867 Atomic orbital electron populations 1.70047 1.07407 1.29509 1.46497 1.26440 0.96888 1.02028 0.94590 0.84668 0.77669 0.74830 0.79474 1.18642 1.18075 1.19159 1.21316 0.91965 0.81005 1.55246 0.90567 1.83856 1.39858 1.13855 1.76881 1.24293 0.87063 0.88471 0.77612 1.90621 1.17103 1.88218 1.50250 1.21152 0.86646 0.78077 1.10076 1.48039 1.23940 1.21055 1.21497 1.22900 0.99267 0.88172 0.95981 1.20817 1.02750 0.98360 1.01768 1.98308 1.89021 1.35911 1.77215 1.24365 1.00536 0.92328 0.96046 1.77625 1.00779 1.19152 1.15142 0.91021 0.80684 0.84063 0.75943 0.77262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.37 13.67 21.63 0.30 -51.08 14 2 C 0.00 0.08 5.49 84.87 0.47 0.55 14 3 Si 1.01 42.95 29.55 68.60 2.03 44.98 14 4 H -0.26 -10.57 7.11 99.48 0.71 -9.87 14 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 14 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 14 7 C -0.42 -25.06 9.64 67.94 0.66 -24.40 14 8 H 0.08 4.72 6.86 -2.91 -0.02 4.70 14 9 O -0.24 -13.28 9.75 14.91 0.15 -13.14 14 10 C 0.38 18.24 7.94 71.24 0.57 18.80 14 11 O -0.57 -31.42 14.95 20.77 0.31 -31.11 14 12 C 0.16 5.11 7.10 85.63 0.61 5.72 14 13 N -0.36 -11.64 3.40 -351.68 -1.20 -12.84 14 14 C 0.08 2.05 11.43 83.54 0.95 3.00 14 15 C -0.20 -5.08 6.65 22.02 0.15 -4.93 14 16 Cl -0.03 -0.69 29.30 -2.72 -0.08 -0.77 14 17 C 0.05 1.60 12.02 85.25 1.02 2.62 14 18 N -0.31 -11.32 11.65 -56.98 -0.66 -11.98 14 19 H 0.28 14.53 8.31 -92.70 -0.77 13.76 14 20 H 0.18 3.82 8.07 -2.38 -0.02 3.80 14 21 H 0.14 3.84 8.14 -2.39 -0.02 3.82 14 22 H 0.22 3.36 8.06 -2.91 -0.02 3.34 14 23 H 0.21 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -76.60 241.36 6.51 -70.10 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.24 Total: 4.47 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.42 Total: 1.36 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.56 Total: -75.89 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: 0.46 Total: -44.25 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -76.60 6.51 -70.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308190255.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.547 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds