Wall clock time and date at job start Sun Mar 29 2020 22:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47145 * 179.97438 * 10 9 7 12 12 C 1.81401 * 103.00097 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47326 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47994 * 305.00468 * 13 12 11 15 15 C 1.53088 * 109.47984 * 184.97381 * 13 12 11 16 16 C 1.53185 * 109.15989 * 182.41740 * 15 13 12 17 17 C 1.53182 * 109.04527 * 56.96867 * 16 15 13 18 18 C 1.53094 * 109.15901 * 303.02120 * 17 16 15 19 19 O 1.42905 * 109.47836 * 65.02086 * 13 12 11 20 20 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 22 22 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 25 25 H 1.09007 * 109.46813 * 299.99841 * 12 11 10 26 26 H 1.08998 * 109.47330 * 59.99409 * 12 11 10 27 27 H 1.09001 * 109.52405 * 302.31075 * 15 13 12 28 28 H 1.08994 * 109.52053 * 62.50815 * 15 13 12 29 29 H 1.08992 * 109.53743 * 297.09689 * 16 15 13 30 30 H 1.09000 * 109.61380 * 176.88002 * 16 15 13 31 31 H 1.08991 * 109.52512 * 183.11988 * 17 16 15 32 32 H 1.08994 * 109.57642 * 62.95676 * 17 16 15 33 33 H 1.08993 * 109.48640 * 297.62933 * 18 17 16 34 34 H 1.09006 * 109.48755 * 177.59580 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 6 2.6650 -6.4702 0.0004 13 6 2.0542 -7.8730 0.0016 14 1 1.3695 -7.9706 0.8440 15 6 3.1688 -8.9150 0.1260 16 6 2.5551 -10.3173 0.0657 17 6 1.7667 -10.4621 -1.2397 18 6 0.7062 -9.3603 -1.3110 19 8 1.3411 -8.0833 -1.2188 20 1 -0.4849 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8719 -3.6044 -0.8895 24 1 2.8719 -3.6043 0.8905 25 1 3.2805 -6.3423 -0.8901 26 1 3.2818 -6.3422 0.8899 27 1 3.8761 -8.7915 -0.6941 28 1 3.6854 -8.7840 1.0767 29 1 1.8854 -10.4589 0.9138 30 1 3.3475 -11.0651 0.0979 31 1 1.2809 -11.4374 -1.2654 32 1 2.4448 -10.3705 -2.0880 33 1 0.0040 -9.4775 -0.4857 34 1 0.1702 -9.4323 -2.2574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308193881.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:48 Heat of formation + Delta-G solvation = -95.467447 kcal Electronic energy + Delta-G solvation = -13715.921273 eV Core-core repulsion = 11352.101923 eV Total energy + Delta-G solvation = -2363.819350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32307 -35.77707 -34.54539 -33.79550 -32.90347 -28.90633 -27.31109 -25.18555 -23.74155 -22.68547 -21.17791 -18.67455 -17.45414 -17.14910 -16.88382 -16.51018 -15.64205 -15.60404 -15.46168 -14.97949 -14.34654 -14.11584 -13.93604 -13.57086 -13.42782 -13.09801 -12.91798 -12.41029 -12.21944 -12.16752 -11.98748 -11.79214 -11.60210 -11.32900 -11.15309 -10.79453 -10.60968 -10.32835 -8.58448 -8.23078 -6.37191 0.78353 1.41092 1.43186 1.54443 1.80452 2.40753 2.79155 3.09944 3.67568 3.92102 3.93212 4.04441 4.10652 4.25847 4.26227 4.38231 4.40161 4.48300 4.67348 4.72892 4.87192 4.87847 4.93823 5.07160 5.12546 5.18708 5.37452 5.39186 5.49110 5.73479 6.10726 6.31758 6.77099 7.32389 8.88976 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077988 B = 0.004197 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.941409 B = 6669.110616 C = 6877.266772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.050 4.050 11 S -0.314 6.314 12 C -0.070 4.070 13 C 0.108 3.892 14 H 0.060 0.940 15 C -0.140 4.140 16 C -0.121 4.121 17 C -0.152 4.152 18 C 0.051 3.949 19 O -0.397 6.397 20 H 0.266 0.734 21 H -0.007 1.007 22 H -0.004 1.004 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -21.006 0.248 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.198 4.198 11 S -0.086 6.086 12 C -0.218 4.218 13 C 0.050 3.950 14 H 0.078 0.922 15 C -0.179 4.179 16 C -0.158 4.158 17 C -0.189 4.189 18 C -0.026 4.026 19 O -0.317 6.317 20 H 0.075 0.925 21 H 0.012 0.988 22 H 0.015 0.985 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.779 -20.932 0.108 21.715 hybrid contribution 1.148 1.099 0.077 1.592 sum 6.927 -19.833 0.185 21.008 Atomic orbital electron populations 1.70126 1.08052 1.28091 1.50949 1.26059 0.95806 1.03646 0.94284 0.85312 0.78606 0.77699 0.78596 1.19653 1.20644 1.18335 1.21561 0.93725 0.91366 1.51654 0.91402 1.18679 0.93709 0.91565 0.95473 1.23316 1.00137 0.92591 1.03726 1.87159 1.19919 1.03383 1.98114 1.23463 0.98171 0.94010 1.06116 1.21792 0.93777 0.91980 0.87481 0.92206 1.22182 0.97374 0.94509 1.03885 1.21612 1.00358 0.96162 0.97681 1.22174 0.98632 0.99455 0.98682 1.22771 0.94655 0.82581 1.02567 1.88027 1.69411 1.35804 1.38449 0.92542 0.98816 0.98517 0.90889 0.90384 0.89571 0.87126 0.90872 0.89125 0.91359 0.89572 0.89042 0.91369 0.93129 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16 8 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.04 2.46 4.98 29.85 0.15 2.61 16 10 C -0.05 -2.20 5.88 71.98 0.42 -1.77 16 11 S -0.31 -12.49 21.52 -56.49 -1.22 -13.70 16 12 C -0.07 -1.95 5.63 71.98 0.41 -1.55 16 13 C 0.11 2.64 2.64 30.62 0.08 2.72 16 14 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 15 C -0.14 -2.37 5.42 30.69 0.17 -2.21 16 16 C -0.12 -1.65 6.03 30.72 0.19 -1.47 16 17 C -0.15 -2.23 6.14 30.69 0.19 -2.04 16 18 C 0.05 1.02 6.84 72.01 0.49 1.51 16 19 O -0.40 -11.18 10.16 -148.98 -1.51 -12.69 16 20 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 21 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 24 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -68.25 292.13 3.40 -64.85 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.04 Total: 5.87 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 2.79 Total: -32.97 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.28 Total: -57.79 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.51 Total: -12.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -12.49 SS G_CDS: -1.22 Total: -13.70 kcal Total: -68.25 3.40 -64.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193881.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.622 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds