Wall clock time and date at job start Sun Mar 29 2020 22:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.81401 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47171 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47708 * 60.02288 * 13 12 11 15 15 C 1.53093 * 109.48062 * 180.02562 * 13 12 11 16 16 C 1.53173 * 109.16199 * 177.59263 * 15 13 12 17 17 C 1.53185 * 109.03490 * 303.01747 * 16 15 13 18 18 C 1.53085 * 109.16311 * 56.98311 * 17 16 15 19 19 O 1.42901 * 109.47872 * 300.00464 * 13 12 11 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09007 * 109.47129 * 300.00188 * 12 11 10 26 26 H 1.08998 * 109.47169 * 59.99851 * 12 11 10 27 27 H 1.09002 * 109.52064 * 297.49464 * 15 13 12 28 28 H 1.09001 * 109.52257 * 57.68392 * 15 13 12 29 29 H 1.08995 * 109.54599 * 183.14935 * 16 15 13 30 30 H 1.09005 * 109.54788 * 62.88244 * 16 15 13 31 31 H 1.08999 * 109.51877 * 297.07269 * 17 16 15 32 32 H 1.09002 * 109.51829 * 176.88969 * 17 16 15 33 33 H 1.08996 * 109.48414 * 182.40813 * 18 17 16 34 34 H 1.08998 * 109.49162 * 62.37801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 6 2.6652 -6.4702 0.0004 13 6 2.0545 -7.8730 0.0003 14 1 1.4383 -8.0010 -0.8896 15 6 3.1740 -8.9172 0.0002 16 6 2.5557 -10.3173 0.0609 17 6 1.6672 -10.4176 1.3047 18 6 0.6059 -9.3155 1.2545 19 8 1.2470 -8.0413 1.1673 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 3.2807 -6.3422 -0.8901 26 1 3.2820 -6.3421 0.8899 27 1 3.7638 -8.8187 -0.9111 28 1 3.8150 -8.7641 0.8684 29 1 3.3479 -11.0637 0.1175 30 1 1.9541 -10.4893 -0.8317 31 1 2.2778 -10.2949 2.1993 32 1 1.1796 -11.3922 1.3263 33 1 -0.0025 -9.3552 2.1579 34 1 -0.0298 -9.4623 0.3814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308193882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:50 Heat of formation + Delta-G solvation = -80.976672 kcal Electronic energy + Delta-G solvation = -13752.945879 eV Core-core repulsion = 11389.754896 eV Total energy + Delta-G solvation = -2363.190983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47015 -33.99672 -33.77111 -32.89260 -30.63294 -27.98718 -24.73714 -24.36888 -22.58527 -21.26343 -20.42292 -16.78409 -16.52084 -16.17049 -15.73510 -14.82942 -14.65082 -13.99077 -13.86737 -13.72009 -13.31428 -12.89265 -12.74638 -12.45409 -12.31246 -11.53396 -11.31698 -11.15913 -10.90760 -10.87453 -10.46664 -10.28019 -10.21073 -9.95819 -9.60718 -9.30634 -8.54127 -8.34446 -7.08076 -6.37728 -4.08303 2.16919 3.25020 3.44239 3.46231 3.65067 3.67664 4.50049 4.55115 4.59404 4.62956 4.80734 4.99475 5.06434 5.23523 5.35445 5.39869 5.47145 5.50412 5.57796 5.67880 5.73486 5.80205 5.90961 5.94848 6.06582 6.11229 6.64825 7.18716 7.32534 7.42604 8.12223 8.42076 8.84405 9.64069 11.02779 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077604 B = 0.004235 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.719550 B = 6610.146913 C = 6830.011544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.057 4.057 11 S -0.271 6.271 12 C -0.085 4.085 13 C 0.110 3.890 14 H 0.065 0.935 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.157 4.157 18 C 0.059 3.941 19 O -0.363 6.363 20 H 0.270 0.730 21 H 0.018 0.982 22 H 0.017 0.983 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -20.314 0.167 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.068 0.932 9 C -0.014 4.014 10 C -0.205 4.205 11 S -0.043 6.043 12 C -0.233 4.233 13 C 0.051 3.949 14 H 0.083 0.917 15 C -0.186 4.186 16 C -0.159 4.159 17 C -0.195 4.195 18 C -0.018 4.018 19 O -0.282 6.282 20 H 0.081 0.919 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.174 -18.696 0.307 19.158 hybrid contribution 1.654 -1.799 -0.188 2.451 sum 5.828 -20.494 0.119 21.307 Atomic orbital electron populations 1.70761 1.06874 1.30810 1.46006 1.25890 0.96541 1.02676 0.93623 0.83508 0.74853 0.75155 0.76518 1.20655 1.21405 1.21381 1.21945 0.94251 0.91357 1.56650 0.93154 1.19010 0.94078 0.91044 0.97233 1.23536 1.01179 0.92602 1.03146 1.87028 1.16762 1.02504 1.97971 1.23316 0.99957 0.95159 1.04916 1.21725 0.91584 0.92440 0.89175 0.91718 1.22220 0.98451 0.94806 1.03160 1.21580 0.99350 0.96772 0.98189 1.22213 0.98779 0.99509 0.98989 1.22555 0.93949 0.83246 1.02029 1.88095 1.64089 1.33301 1.42707 0.91908 0.96386 0.96504 0.91463 0.91339 0.89339 0.89905 0.90737 0.90852 0.91457 0.91772 0.91062 0.91037 0.88841 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.44 13.65 55.43 0.76 -27.68 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.60 -17.52 9.11 -34.44 -0.31 -17.84 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.02 0.67 4.29 -27.88 -0.12 0.55 16 10 C -0.06 -1.25 5.88 37.16 0.22 -1.03 16 11 S -0.27 -5.33 21.38 -107.50 -2.30 -7.62 16 12 C -0.09 -1.25 5.67 37.16 0.21 -1.04 16 13 C 0.11 1.40 2.69 -26.68 -0.07 1.33 16 14 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.15 -1.43 5.42 -26.59 -0.14 -1.58 16 16 C -0.12 -1.00 6.03 -26.55 -0.16 -1.16 16 17 C -0.16 -1.33 6.14 -26.59 -0.16 -1.50 16 18 C 0.06 0.63 6.84 37.20 0.25 0.88 16 19 O -0.36 -5.23 10.00 -35.23 -0.35 -5.58 16 20 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 21 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 22 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16 23 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 24 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 25 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 26 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -31.93 290.61 -8.81 -40.73 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.82 Total: -3.66 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -0.39 Total: -20.98 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.76 Total: -27.68 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.35 Total: -5.58 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -2.30 Total: -7.62 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -8.81 -40.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.243 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds