Wall clock time and date at job start Sun Mar 29 2020 22:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47098 * 179.97438 * 10 9 7 12 12 C 1.81401 * 102.99894 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47171 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.47708 * 60.02288 * 13 12 11 15 15 C 1.53093 * 109.48062 * 180.02562 * 13 12 11 16 16 C 1.53173 * 109.16199 * 177.59263 * 15 13 12 17 17 C 1.53185 * 109.03490 * 303.01747 * 16 15 13 18 18 C 1.53085 * 109.16311 * 56.98311 * 17 16 15 19 19 O 1.42901 * 109.47872 * 300.00464 * 13 12 11 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 22 22 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 24 24 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 25 25 H 1.09007 * 109.47129 * 300.00188 * 12 11 10 26 26 H 1.08998 * 109.47169 * 59.99851 * 12 11 10 27 27 H 1.09002 * 109.52064 * 297.49464 * 15 13 12 28 28 H 1.09001 * 109.52257 * 57.68392 * 15 13 12 29 29 H 1.08995 * 109.54599 * 183.14935 * 16 15 13 30 30 H 1.09005 * 109.54788 * 62.88244 * 16 15 13 31 31 H 1.08999 * 109.51877 * 297.07269 * 17 16 15 32 32 H 1.09002 * 109.51829 * 176.88969 * 17 16 15 33 33 H 1.08996 * 109.48414 * 182.40813 * 18 17 16 34 34 H 1.08998 * 109.49162 * 62.37801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2331 0.0013 12 6 2.6652 -6.4702 0.0004 13 6 2.0545 -7.8730 0.0003 14 1 1.4383 -8.0010 -0.8896 15 6 3.1740 -8.9172 0.0002 16 6 2.5557 -10.3173 0.0609 17 6 1.6672 -10.4176 1.3047 18 6 0.6059 -9.3155 1.2545 19 8 1.2470 -8.0413 1.1673 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6242 -2.5567 0.8904 22 1 0.6248 -2.5571 -0.8896 23 1 2.8720 -3.6043 -0.8895 24 1 2.8721 -3.6042 0.8905 25 1 3.2807 -6.3422 -0.8901 26 1 3.2820 -6.3421 0.8899 27 1 3.7638 -8.8187 -0.9111 28 1 3.8150 -8.7641 0.8684 29 1 3.3479 -11.0637 0.1175 30 1 1.9541 -10.4893 -0.8317 31 1 2.2778 -10.2949 2.1993 32 1 1.1796 -11.3922 1.3263 33 1 -0.0025 -9.3552 2.1579 34 1 -0.0298 -9.4623 0.3814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308193882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:50 Heat of formation + Delta-G solvation = -99.792943 kcal Electronic energy + Delta-G solvation = -13753.761813 eV Core-core repulsion = 11389.754896 eV Total energy + Delta-G solvation = -2364.006918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.36171 -36.19035 -34.58029 -33.84165 -32.74071 -28.94240 -26.84572 -25.22109 -23.94652 -22.93876 -21.21064 -19.00985 -17.52787 -17.29768 -16.93067 -15.83471 -15.77493 -15.65021 -15.52195 -15.24279 -14.62648 -14.17888 -14.05688 -13.69884 -13.52204 -12.85018 -12.79689 -12.29197 -12.26979 -12.21305 -11.99940 -11.89666 -11.66305 -11.28048 -11.02969 -10.66871 -10.59531 -10.36312 -8.74361 -8.67128 -6.46909 0.68606 1.53106 1.62257 1.70334 1.81708 2.56651 2.75626 3.11654 3.63179 3.87741 3.89810 3.98881 4.07024 4.10425 4.18895 4.23951 4.35347 4.44374 4.63060 4.68641 4.69703 4.84523 4.90462 5.04328 5.09625 5.11920 5.15934 5.21762 5.36255 5.85015 6.09589 6.28153 6.46525 7.36526 8.65751 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.077604 B = 0.004235 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.719550 B = 6610.146913 C = 6830.011544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.283 1.283 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.620 4.620 8 H 0.059 0.941 9 C 0.029 3.971 10 C -0.046 4.046 11 S -0.308 6.308 12 C -0.069 4.069 13 C 0.108 3.892 14 H 0.061 0.939 15 C -0.140 4.140 16 C -0.120 4.120 17 C -0.152 4.152 18 C 0.050 3.950 19 O -0.397 6.397 20 H 0.254 0.746 21 H -0.009 1.009 22 H -0.007 1.007 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.503 -21.566 -0.108 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.235 4.235 3 Si 0.943 3.057 4 H -0.208 1.208 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.659 4.659 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.194 4.194 11 S -0.081 6.081 12 C -0.217 4.217 13 C 0.049 3.951 14 H 0.079 0.921 15 C -0.180 4.180 16 C -0.158 4.158 17 C -0.190 4.190 18 C -0.026 4.026 19 O -0.317 6.317 20 H 0.063 0.937 21 H 0.009 0.991 22 H 0.012 0.988 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.194 -19.978 0.031 20.916 hybrid contribution 0.989 -1.543 -0.089 1.835 sum 7.184 -21.521 -0.058 22.688 Atomic orbital electron populations 1.70907 1.08106 1.29851 1.48221 1.27619 0.96529 1.07075 0.92289 0.82871 0.74059 0.70472 0.78250 1.20835 1.19001 1.19143 1.22387 0.94944 0.92491 1.56052 0.92260 1.18844 0.94395 0.92975 0.94756 1.23185 0.99912 0.92549 1.03735 1.87132 1.19812 1.03003 1.98107 1.23494 0.98072 0.94014 1.06166 1.21799 0.92580 0.91985 0.88700 0.92060 1.22184 0.97290 0.94513 1.03975 1.21612 0.99856 0.96146 0.98164 1.22177 0.98206 0.99501 0.99074 1.22769 0.94710 0.82698 1.02406 1.88041 1.64789 1.35497 1.43326 0.93670 0.99100 0.98837 0.90457 0.90961 0.87120 0.89531 0.89060 0.90951 0.89547 0.91268 0.91428 0.88991 0.88444 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.85 13.65 21.45 0.29 -59.55 16 2 C -0.04 -2.23 5.46 84.65 0.46 -1.76 16 3 Si 1.12 50.53 29.90 68.60 2.05 52.58 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.62 -36.37 9.11 25.60 0.23 -36.14 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.59 4.29 29.85 0.13 1.72 16 10 C -0.05 -2.03 5.88 71.98 0.42 -1.61 16 11 S -0.31 -12.19 21.38 -56.49 -1.21 -13.40 16 12 C -0.07 -1.93 5.67 71.98 0.41 -1.52 16 13 C 0.11 2.60 2.69 30.62 0.08 2.68 16 14 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 15 C -0.14 -2.34 5.42 30.68 0.17 -2.17 16 16 C -0.12 -1.61 6.03 30.71 0.19 -1.43 16 17 C -0.15 -2.21 6.14 30.68 0.19 -2.02 16 18 C 0.05 1.01 6.84 72.01 0.49 1.50 16 19 O -0.40 -11.11 10.00 -148.98 -1.49 -12.60 16 20 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 21 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 22 H -0.01 -0.40 8.01 -2.39 -0.02 -0.42 16 23 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 24 H 0.07 3.10 8.14 -2.39 -0.02 3.09 16 25 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -69.97 290.61 3.55 -66.42 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 1.14 Total: 7.32 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 2.77 Total: -40.76 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.29 Total: -59.55 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.49 Total: -12.60 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 16 Polarization: -12.19 SS G_CDS: -1.21 Total: -13.40 kcal Total: -69.97 3.55 -66.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308193882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.375 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds