Wall clock time and date at job start Sun Mar 29 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48501 * 109.46921 * 270.00289 * 3 2 1 5 5 H 1.48497 * 109.46791 * 29.99880 * 3 2 1 6 6 H 1.48496 * 109.47410 * 149.99756 * 3 2 1 7 7 C 1.37879 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00046 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00045 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46671 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.46612 * 179.97438 * 10 9 7 12 12 C 1.81402 * 102.99807 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47195 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47090 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.87222 * 306.00617 * 14 13 12 16 16 C 1.54096 * 109.87660 * 184.99575 * 14 13 12 17 17 C 1.54817 * 104.18822 * 238.54762 * 16 14 13 18 18 C 1.54991 * 102.09285 * 339.11830 * 17 16 14 19 19 O 1.43749 * 109.87535 * 67.16544 * 14 13 12 20 20 H 0.97000 * 120.00658 * 0.02562 * 1 2 3 21 21 H 1.08991 * 109.47001 * 60.00210 * 9 7 2 22 22 H 1.08996 * 109.46940 * 299.99795 * 9 7 2 23 23 H 1.08991 * 109.47574 * 60.00148 * 10 9 7 24 24 H 1.08996 * 109.46934 * 299.99386 * 10 9 7 25 25 H 1.08991 * 109.47072 * 59.99951 * 12 11 10 26 26 H 1.09006 * 109.46970 * 299.99626 * 12 11 10 27 27 H 1.08999 * 109.47097 * 59.99835 * 13 12 11 28 28 H 1.09000 * 109.46533 * 300.00000 * 13 12 11 29 29 H 1.09004 * 110.48850 * 119.87028 * 16 14 13 30 30 H 1.09002 * 110.60601 * 357.27991 * 16 14 13 31 31 H 1.08996 * 110.90849 * 97.31959 * 17 16 14 32 32 H 1.09004 * 110.90250 * 220.92384 * 17 16 14 33 33 H 1.09000 * 110.62043 * 155.51925 * 18 17 16 34 34 H 1.08998 * 110.62229 * 278.52472 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0010 11 16 5.8356 -2.6364 0.0009 12 6 6.2437 -4.4039 0.0016 13 6 7.7639 -4.5764 0.0022 14 6 8.1081 -6.0671 0.0034 15 1 7.6040 -6.5631 0.8328 16 6 9.6326 -6.2528 0.1303 17 6 10.0243 -7.0516 -1.1367 18 6 8.6736 -7.6907 -1.5481 19 8 7.7073 -6.6622 -1.2422 20 1 -0.4851 0.8400 -0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1502 -0.8892 24 1 3.6579 -3.1505 0.8908 25 1 5.8247 -4.8738 -0.8881 26 1 5.8248 -4.8732 0.8918 27 1 8.1825 -4.1065 0.8922 28 1 8.1831 -4.1069 -0.8877 29 1 9.8744 -6.8202 1.0290 30 1 10.1370 -5.2865 0.1431 31 1 10.3938 -6.3865 -1.9171 32 1 10.7616 -7.8189 -0.9001 33 1 8.6660 -7.9195 -2.6138 34 1 8.4784 -8.5877 -0.9605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308199906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:40 Heat of formation + Delta-G solvation = -92.100685 kcal Electronic energy + Delta-G solvation = -13499.356708 eV Core-core repulsion = 11135.683352 eV Total energy + Delta-G solvation = -2363.673356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.41142 -35.77836 -34.70457 -33.30329 -32.95543 -29.25112 -27.60023 -24.75387 -22.96961 -22.35582 -21.79711 -19.15180 -17.48221 -16.95836 -16.81049 -16.54403 -16.41085 -15.79937 -14.87105 -14.85286 -14.65018 -14.49386 -13.97419 -13.67625 -13.11856 -13.08143 -12.65570 -12.45569 -12.27521 -12.12461 -11.90769 -11.82490 -11.67795 -11.57674 -11.25877 -10.88094 -10.81991 -10.61425 -8.67067 -8.34733 -6.40742 0.74878 1.35137 1.36245 1.49277 1.71017 2.33027 2.95176 3.00166 3.65138 3.72892 3.97203 4.03809 4.06926 4.17922 4.23007 4.28764 4.39220 4.53172 4.67534 4.75128 4.77520 4.83464 4.96345 5.00617 5.06388 5.15936 5.17059 5.24755 5.28711 5.51786 6.01250 6.17611 6.64686 7.23940 8.81489 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.070523 B = 0.004031 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.938564 B = 6944.789480 C = 7172.568623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.535 4.535 8 H 0.038 0.962 9 C 0.009 3.991 10 C -0.047 4.047 11 S -0.310 6.310 12 C -0.069 4.069 13 C -0.093 4.093 14 C 0.078 3.922 15 H 0.075 0.925 16 C -0.149 4.149 17 C -0.151 4.151 18 C 0.036 3.964 19 O -0.403 6.403 20 H 0.270 0.730 21 H 0.026 0.974 22 H 0.022 0.978 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.734 -14.049 0.070 26.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.574 4.574 8 H 0.056 0.944 9 C -0.030 4.030 10 C -0.195 4.195 11 S -0.082 6.082 12 C -0.217 4.217 13 C -0.131 4.131 14 C 0.019 3.981 15 H 0.093 0.907 16 C -0.187 4.187 17 C -0.189 4.189 18 C -0.040 4.040 19 O -0.323 6.323 20 H 0.078 0.922 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.085 -13.017 -0.049 26.502 hybrid contribution -1.181 -0.356 0.000 1.234 sum 21.904 -13.373 -0.049 25.663 Atomic orbital electron populations 1.70033 1.08148 1.28454 1.51877 1.25931 0.95630 1.03371 0.93716 0.85674 0.79426 0.78315 0.79411 1.18984 1.20307 1.17438 1.21290 0.90967 0.93613 1.51532 0.94402 1.19208 0.94315 0.92168 0.97271 1.23151 0.90657 1.01937 1.03797 1.86625 1.09652 1.13754 1.98186 1.23331 1.01098 0.92316 1.04959 1.21530 0.91926 0.95707 1.03976 1.22855 0.95718 0.92477 0.87079 0.90746 1.23014 0.93653 1.02328 0.99675 1.23134 0.97893 1.00291 0.97563 1.23764 0.87191 0.90979 1.02061 1.88912 1.50983 1.52195 1.40206 0.92151 0.95612 0.95961 0.91244 0.90844 0.90640 0.89678 0.88744 0.91088 0.88862 0.89748 0.90746 0.88201 0.88474 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.78 13.96 21.45 0.30 -59.48 16 2 C 0.01 0.68 5.47 84.66 0.46 1.15 16 3 Si 0.95 45.31 27.47 68.60 1.88 47.20 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 7 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C 0.01 0.45 4.05 29.85 0.12 0.57 16 10 C -0.05 -2.00 5.88 71.98 0.42 -1.58 16 11 S -0.31 -11.04 21.74 -56.49 -1.23 -12.27 16 12 C -0.07 -1.89 5.86 71.98 0.42 -1.47 16 13 C -0.09 -2.00 4.71 30.59 0.14 -1.86 16 14 C 0.08 1.42 3.41 30.96 0.11 1.53 16 15 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 16 C -0.15 -1.85 6.64 31.59 0.21 -1.64 16 17 C -0.15 -1.71 7.15 31.90 0.23 -1.48 16 18 C 0.04 0.53 7.72 72.66 0.56 1.09 16 19 O -0.40 -9.05 10.84 -148.98 -1.61 -10.66 16 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 21 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 22 H 0.02 1.09 7.57 -2.39 -0.02 1.08 16 23 H 0.07 2.93 8.14 -2.40 -0.02 2.91 16 24 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.07 2.22 7.91 -2.40 -0.02 2.20 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.65 291.54 3.25 -64.40 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.98 Total: 5.91 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 2.92 Total: -35.10 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.30 Total: -59.48 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.61 Total: -10.66 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.20 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.23 Total: -12.27 kcal Total: -67.65 3.25 -64.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308199906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds