Wall clock time and date at job start Sun Mar 29 2020 22:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 C 1.81397 * 103.00143 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47527 * 179.97438 * 12 11 10 14 14 C 1.52993 * 109.47431 * 179.97438 * 13 12 11 15 15 H 1.09005 * 109.86839 * 53.99732 * 14 13 12 16 16 C 1.54101 * 109.87901 * 175.00073 * 14 13 12 17 17 C 1.54812 * 104.18821 * 121.45871 * 16 14 13 18 18 C 1.54993 * 102.09202 * 20.87812 * 17 16 14 19 19 O 1.43739 * 109.88350 * 292.83500 * 14 13 12 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 22 22 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 25 25 H 1.09007 * 109.46846 * 299.99983 * 12 11 10 26 26 H 1.09007 * 109.47453 * 59.99610 * 12 11 10 27 27 H 1.08996 * 109.46730 * 300.00157 * 13 12 11 28 28 H 1.08998 * 109.46901 * 59.99649 * 13 12 11 29 29 H 1.09005 * 110.48653 * 240.13304 * 16 14 13 30 30 H 1.08998 * 110.48973 * 2.78065 * 16 14 13 31 31 H 1.08991 * 110.90765 * 139.07991 * 17 16 14 32 32 H 1.09001 * 110.90433 * 262.68579 * 17 16 14 33 33 H 1.09002 * 110.61870 * 81.47991 * 18 17 16 34 34 H 1.09006 * 110.61977 * 204.47605 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 6 2.6650 -6.4702 0.0007 13 6 2.0543 -7.8730 0.0008 14 6 3.1733 -8.9164 0.0009 15 1 3.8552 -8.7283 0.8302 16 6 2.5719 -10.3296 0.1273 17 6 3.0675 -11.0676 -1.1402 18 6 4.2960 -10.2169 -1.5518 19 8 3.8886 -8.8663 -1.2449 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8902 23 1 2.8720 -3.6043 -0.8894 24 1 2.8720 -3.6043 0.8905 25 1 3.2818 -6.3421 -0.8889 26 1 3.2806 -6.3423 0.8911 27 1 1.4378 -8.0007 0.8905 28 1 1.4385 -8.0012 -0.8894 29 1 2.9429 -10.8231 1.0256 30 1 1.4831 -10.2812 0.1394 31 1 3.3634 -12.0897 -0.9044 32 1 2.3064 -11.0545 -1.9204 33 1 5.1707 -10.4967 -0.9646 34 1 4.4976 -10.3243 -2.6176 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308199907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:42 Heat of formation + Delta-G solvation = -76.802631 kcal Electronic energy + Delta-G solvation = -13459.146943 eV Core-core repulsion = 11096.136960 eV Total energy + Delta-G solvation = -2363.009983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65770 -33.72362 -33.61097 -32.26633 -30.80675 -28.37010 -25.28101 -23.78329 -22.03065 -21.19049 -20.70645 -16.66036 -16.46587 -16.13095 -15.81449 -15.24142 -14.47149 -14.19609 -13.87060 -13.48448 -13.35671 -13.01733 -12.30496 -12.01805 -11.94003 -11.64545 -11.37428 -11.13527 -11.04937 -10.95783 -10.84959 -10.50751 -10.12682 -9.86600 -9.59430 -9.36264 -9.01277 -8.38240 -7.05618 -6.02271 -4.06735 2.29647 3.33081 3.33564 3.37647 3.40808 3.66783 4.31507 4.44815 4.50401 4.66017 4.81462 4.98534 5.10471 5.18703 5.33006 5.37345 5.43590 5.50333 5.51924 5.68829 5.73523 5.83445 6.03476 6.07403 6.18333 6.26330 6.74779 6.79557 7.61217 7.70875 7.94490 8.32010 8.98153 9.56812 11.08588 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.073669 B = 0.003804 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.989729 B = 7358.200384 C = 7591.448647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.056 4.056 11 S -0.298 6.298 12 C -0.084 4.084 13 C -0.098 4.098 14 C 0.080 3.920 15 H 0.069 0.931 16 C -0.152 4.152 17 C -0.156 4.156 18 C 0.045 3.955 19 O -0.370 6.370 20 H 0.263 0.737 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -21.233 -0.299 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.203 4.203 11 S -0.070 6.070 12 C -0.233 4.233 13 C -0.137 4.137 14 C 0.020 3.980 15 H 0.087 0.913 16 C -0.190 4.190 17 C -0.193 4.193 18 C -0.032 4.032 19 O -0.289 6.289 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.453 -21.090 -0.419 21.788 hybrid contribution 1.755 0.932 0.147 1.993 sum 7.208 -20.158 -0.272 21.410 Atomic orbital electron populations 1.69963 1.06075 1.26937 1.50028 1.25012 0.94896 0.99278 0.95077 0.86579 0.79518 0.82780 0.78665 1.20148 1.21172 1.20160 1.21083 0.92986 0.90356 1.51751 0.92520 1.18901 0.93414 0.89279 0.98508 1.23645 1.01261 0.92405 1.03035 1.86826 1.18110 1.03915 1.98111 1.23227 0.99506 0.95943 1.04591 1.21518 0.96755 0.91598 1.03785 1.22810 0.93290 0.94595 0.87286 0.91303 1.23012 1.02275 0.95177 0.98538 1.23132 0.98588 0.99573 0.98052 1.23540 0.96203 0.82176 1.01289 1.88943 1.73774 1.26727 1.39503 0.92747 0.95546 0.95560 0.91447 0.91510 0.90019 0.90913 0.89946 0.90327 0.90628 0.90048 0.90377 0.90410 0.92345 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.01 4.98 -27.88 -0.14 0.87 16 10 C -0.06 -1.23 5.88 37.16 0.22 -1.01 16 11 S -0.30 -5.82 21.74 -107.50 -2.34 -8.16 16 12 C -0.08 -1.28 5.86 37.16 0.22 -1.06 16 13 C -0.10 -1.21 4.71 -26.74 -0.13 -1.34 16 14 C 0.08 0.84 3.41 -26.16 -0.09 0.75 16 15 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 16 C -0.15 -1.22 6.64 -25.20 -0.17 -1.39 16 17 C -0.16 -1.13 7.15 -24.72 -0.18 -1.31 16 18 C 0.04 0.38 7.72 38.21 0.29 0.68 16 19 O -0.37 -4.55 10.84 -35.23 -0.38 -4.93 16 20 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 24 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 25 H 0.08 1.29 7.91 -51.92 -0.41 0.88 16 26 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -31.13 295.14 -8.78 -39.91 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -5.85 Total: -4.08 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -0.38 Total: -17.51 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -5.82 SS G_CDS: -2.34 Total: -8.16 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.13 -8.78 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308199907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.895 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds