Wall clock time and date at job start Sun Mar 29 2020 21:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38064 * 119.87407 * 2 1 4 4 C 1.39679 * 120.00917 * 179.97438 * 3 2 1 5 5 C 1.43204 * 120.11162 * 180.02562 * 4 3 2 6 6 N 4.80322 * 134.51504 * 0.04142 * 2 1 3 7 7 C 1.39501 * 119.78385 * 0.02562 * 4 3 2 8 8 C 1.38744 * 119.75610 * 0.02562 * 7 4 3 9 9 N 1.39560 * 120.00807 * 179.97438 * 8 7 4 10 10 C 1.34779 * 120.00124 * 146.63605 * 9 8 7 11 11 O 1.21739 * 119.99855 * 354.72942 * 10 9 8 12 12 C 1.46164 * 119.99978 * 174.45483 * 10 9 8 13 13 H 1.08005 * 120.00429 * 0.26828 * 12 10 9 14 14 C 1.40126 * 120.00063 * 180.27886 * 12 10 9 15 15 N 1.30636 * 119.99580 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00058 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47033 * 89.99882 * 16 14 12 18 18 H 1.48503 * 109.47070 * 209.99744 * 16 14 12 19 19 H 1.48497 * 109.47080 * 329.99835 * 16 14 12 20 20 C 1.38165 * 119.88234 * 180.24940 * 2 1 3 21 21 H 1.08997 * 109.46886 * 90.00945 * 1 2 3 22 22 H 1.09004 * 109.46868 * 210.00564 * 1 2 3 23 23 H 1.09001 * 109.47590 * 330.00161 * 1 2 3 24 24 H 1.07998 * 119.99611 * 359.97230 * 3 2 1 25 25 H 1.07997 * 120.12368 * 180.02562 * 7 4 3 26 26 H 0.97001 * 120.00020 * 326.64145 * 9 8 7 27 27 H 0.97008 * 119.99454 * 180.02562 * 15 14 12 28 28 H 1.07996 * 119.88928 * 0.04423 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1972 0.0000 4 6 3.5915 1.2005 0.0005 5 6 4.3070 2.4410 0.0011 6 7 4.8745 3.4250 0.0025 7 6 4.2873 -0.0086 0.0005 8 6 3.5868 -1.2062 -0.0005 9 7 4.2775 -2.4189 -0.0011 10 6 3.7638 -3.4874 0.6399 11 8 2.7469 -3.3708 1.2991 12 6 4.4242 -4.7874 0.5387 13 1 5.3262 -4.8909 -0.0461 14 6 3.8868 -5.8996 1.2004 15 7 2.7959 -5.7744 1.9080 16 14 4.7304 -7.5613 1.0705 17 1 5.7222 -7.6999 2.1670 18 1 3.7167 -8.6409 1.1804 19 1 5.4228 -7.6638 -0.2391 20 6 2.1954 -1.1980 -0.0052 21 1 -0.3633 -0.0002 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6526 2.1312 -0.0005 25 1 5.3672 -0.0125 0.0014 26 1 5.1274 -2.4927 -0.4627 27 1 2.4241 -6.5443 2.3664 28 1 1.6517 -2.1311 -0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308208310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:54 Heat of formation + Delta-G solvation = 6.014141 kcal Electronic energy + Delta-G solvation = -14680.407749 eV Core-core repulsion = 12082.004676 eV Total energy + Delta-G solvation = -2598.403073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.58415 -37.45318 -36.17108 -33.87603 -32.67390 -32.05569 -29.46040 -26.74832 -26.32841 -23.62783 -21.67370 -19.97022 -17.75872 -17.60305 -15.91110 -15.62127 -15.23511 -15.03286 -14.17840 -13.83495 -13.20742 -13.16481 -12.96669 -12.78394 -12.65585 -12.45824 -11.88325 -11.50538 -11.44350 -11.22968 -11.10386 -10.97523 -10.70369 -10.40083 -9.43872 -8.98333 -8.43071 -7.86439 -7.29027 -6.43292 -4.90743 1.16411 1.72234 2.80755 3.02337 3.10319 3.13199 3.23260 3.89977 4.06529 4.12476 4.43439 4.52459 5.10731 5.33063 5.51071 5.55769 5.64981 5.76570 5.86055 5.99799 6.20238 6.30789 6.52907 6.81492 6.88422 7.11330 7.21743 7.60280 7.64525 7.90315 8.05543 8.77053 9.09102 10.27669 10.47274 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039152 B = 0.006142 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.980836 B = 4557.636686 C = 5148.051072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.016 4.016 5 C 0.270 3.730 6 N -0.441 5.441 7 C -0.134 4.134 8 C 0.196 3.804 9 N -0.699 5.699 10 C 0.542 3.458 11 O -0.559 6.559 12 C -0.537 4.537 13 H 0.073 0.927 14 C 0.086 3.914 15 N -0.757 5.757 16 Si 0.913 3.087 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.097 4.097 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.396 0.604 27 H 0.273 0.727 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 5.625 -4.528 7.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.020 4.020 5 C -0.044 4.044 6 N -0.117 5.117 7 C -0.158 4.158 8 C 0.096 3.904 9 N -0.342 5.342 10 C 0.349 3.651 11 O -0.440 6.440 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.385 5.385 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.118 4.118 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.229 0.771 27 H 0.084 0.916 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.310 7.004 -3.914 8.130 hybrid contribution 0.770 -1.237 -0.195 1.470 sum -0.540 5.767 -4.108 7.102 Atomic orbital electron populations 1.20763 0.90916 1.02956 1.02148 1.19644 0.96129 0.92135 0.99298 1.20742 0.91480 0.97968 1.03444 1.15601 0.92089 0.86090 1.08242 1.25844 0.92892 0.92798 0.92880 1.81186 1.09064 1.11346 1.10122 1.20829 0.99548 0.90009 1.05404 1.17738 0.91649 0.86278 0.94687 1.44228 1.24748 1.08935 1.56302 1.18400 0.85138 0.82896 0.78672 1.90643 1.26290 1.83936 1.43169 1.20858 1.12064 0.91532 1.32805 0.90885 1.25745 0.94145 1.00432 0.93191 1.69976 1.16166 1.31104 1.21272 0.86271 0.79531 0.80907 0.79565 1.19554 1.20255 1.18730 1.21504 0.93122 0.98839 0.98377 0.91302 0.90965 0.91759 0.85959 0.85565 0.77065 0.91632 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.00 36.01 0.36 -1.00 15 2 C -0.07 -1.08 5.87 -104.71 -0.61 -1.70 15 3 C -0.11 -1.59 9.40 -39.11 -0.37 -1.96 15 4 C -0.02 -0.24 5.73 -106.96 -0.61 -0.85 15 5 C 0.27 4.06 15.33 -22.47 -0.34 3.72 15 6 N -0.44 -7.24 18.54 41.84 0.78 -6.46 15 7 C -0.13 -2.11 9.67 -38.92 -0.38 -2.49 15 8 C 0.20 3.67 6.27 -83.82 -0.53 3.14 15 9 N -0.70 -14.34 5.32 -11.23 -0.06 -14.40 15 10 C 0.54 14.00 7.47 -13.08 -0.10 13.91 15 11 O -0.56 -16.25 12.70 5.15 0.07 -16.19 15 12 C -0.54 -13.86 9.54 -35.69 -0.34 -14.20 15 13 H 0.07 1.71 7.85 -52.48 -0.41 1.30 15 14 C 0.09 2.22 5.50 -17.35 -0.10 2.13 15 15 N -0.76 -20.98 11.82 55.55 0.66 -20.32 15 16 Si 0.91 18.68 29.56 -169.99 -5.02 13.66 15 17 H -0.27 -5.46 7.11 56.52 0.40 -5.05 15 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 20 C -0.10 -1.81 8.29 -39.27 -0.33 -2.14 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.95 8.08 -51.93 -0.42 0.53 15 23 H 0.06 0.66 8.08 -51.93 -0.42 0.24 15 24 H 0.12 1.40 8.06 -52.49 -0.42 0.97 15 25 H 0.13 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.40 6.86 8.79 -40.82 -0.36 6.50 15 27 H 0.27 6.85 8.29 -40.82 -0.34 6.51 15 28 H 0.15 3.14 6.42 -52.49 -0.34 2.81 15 LS Contribution 264.10 15.07 3.98 3.98 Total: -1.00 -30.41 264.10 -5.30 -35.71 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -2.35 Total: 5.45 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.34 Total: -1.44 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 1.37 Total: -41.18 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.07 Total: -16.19 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.41 -5.30 -35.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308208310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.723 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds