Wall clock time and date at job start Sun Mar 29 2020 21:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38064 * 119.87407 * 2 1 4 4 C 1.39679 * 120.00917 * 179.97438 * 3 2 1 5 5 C 1.43204 * 120.11162 * 180.02562 * 4 3 2 6 6 N 4.80322 * 134.51504 * 0.04142 * 2 1 3 7 7 C 1.39501 * 119.78385 * 0.02562 * 4 3 2 8 8 C 1.38744 * 119.75610 * 0.02562 * 7 4 3 9 9 N 1.39560 * 120.00807 * 179.97438 * 8 7 4 10 10 C 1.34779 * 120.00124 * 146.63605 * 9 8 7 11 11 O 1.21739 * 119.99855 * 354.72942 * 10 9 8 12 12 C 1.46164 * 119.99978 * 174.45483 * 10 9 8 13 13 H 1.08005 * 120.00429 * 0.26828 * 12 10 9 14 14 C 1.40126 * 120.00063 * 180.27886 * 12 10 9 15 15 N 1.30636 * 119.99580 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 120.00058 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47033 * 89.99882 * 16 14 12 18 18 H 1.48503 * 109.47070 * 209.99744 * 16 14 12 19 19 H 1.48497 * 109.47080 * 329.99835 * 16 14 12 20 20 C 1.38165 * 119.88234 * 180.24940 * 2 1 3 21 21 H 1.08997 * 109.46886 * 90.00945 * 1 2 3 22 22 H 1.09004 * 109.46868 * 210.00564 * 1 2 3 23 23 H 1.09001 * 109.47590 * 330.00161 * 1 2 3 24 24 H 1.07998 * 119.99611 * 359.97230 * 3 2 1 25 25 H 1.07997 * 120.12368 * 180.02562 * 7 4 3 26 26 H 0.97001 * 120.00020 * 326.64145 * 9 8 7 27 27 H 0.97008 * 119.99454 * 180.02562 * 15 14 12 28 28 H 1.07996 * 119.88928 * 0.04423 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1972 0.0000 4 6 3.5915 1.2005 0.0005 5 6 4.3070 2.4410 0.0011 6 7 4.8745 3.4250 0.0025 7 6 4.2873 -0.0086 0.0005 8 6 3.5868 -1.2062 -0.0005 9 7 4.2775 -2.4189 -0.0011 10 6 3.7638 -3.4874 0.6399 11 8 2.7469 -3.3708 1.2991 12 6 4.4242 -4.7874 0.5387 13 1 5.3262 -4.8909 -0.0461 14 6 3.8868 -5.8996 1.2004 15 7 2.7959 -5.7744 1.9080 16 14 4.7304 -7.5613 1.0705 17 1 5.7222 -7.6999 2.1670 18 1 3.7167 -8.6409 1.1804 19 1 5.4228 -7.6638 -0.2391 20 6 2.1954 -1.1980 -0.0052 21 1 -0.3633 -0.0002 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6526 2.1312 -0.0005 25 1 5.3672 -0.0125 0.0014 26 1 5.1274 -2.4927 -0.4627 27 1 2.4241 -6.5443 2.3664 28 1 1.6517 -2.1311 -0.0100 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308208310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:54 Heat of formation + Delta-G solvation = -13.352116 kcal Electronic energy + Delta-G solvation = -14681.247533 eV Core-core repulsion = 12082.004676 eV Total energy + Delta-G solvation = -2599.242857 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02133 -39.11951 -37.49216 -35.52412 -34.56714 -33.39228 -30.97561 -28.28338 -27.82207 -24.97282 -23.22408 -21.55038 -19.45403 -19.06027 -17.59451 -17.11837 -16.73338 -16.48312 -15.81989 -15.14376 -14.66860 -14.60145 -14.32589 -14.20155 -14.00252 -13.83421 -13.20874 -13.09954 -12.86757 -12.71458 -12.64478 -12.44392 -12.22893 -12.01991 -11.04499 -10.79821 -9.96279 -9.59611 -8.82715 -8.35082 -6.91928 -0.12896 0.42983 1.42422 1.42816 1.57738 1.59148 1.93942 2.22618 2.42773 2.70720 2.95306 3.05500 3.60173 3.92253 4.19144 4.33005 4.39899 4.49450 4.79886 4.91369 4.95099 5.24556 5.27816 5.29011 5.42329 5.61911 5.76136 5.85270 6.17539 6.34744 6.41823 6.80881 7.34078 8.36749 8.58247 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.039152 B = 0.006142 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.980836 B = 4557.636686 C = 5148.051072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.094 4.094 4 C -0.011 4.011 5 C 0.290 3.710 6 N -0.459 5.459 7 C -0.121 4.121 8 C 0.165 3.835 9 N -0.693 5.693 10 C 0.531 3.469 11 O -0.602 6.602 12 C -0.565 4.565 13 H 0.092 0.908 14 C 0.032 3.968 15 N -0.810 5.810 16 Si 0.997 3.003 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.249 1.249 20 C -0.120 4.120 21 H 0.088 0.912 22 H 0.054 0.946 23 H 0.092 0.908 24 H 0.160 0.840 25 H 0.146 0.854 26 H 0.409 0.591 27 H 0.277 0.723 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 6.709 -5.241 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.069 4.069 3 C -0.115 4.115 4 C -0.015 4.015 5 C -0.025 4.025 6 N -0.135 5.135 7 C -0.145 4.145 8 C 0.067 3.933 9 N -0.338 5.338 10 C 0.338 3.662 11 O -0.488 6.488 12 C -0.600 4.600 13 H 0.111 0.889 14 C -0.185 4.185 15 N -0.439 5.439 16 Si 0.817 3.183 17 H -0.188 1.188 18 H -0.198 1.198 19 H -0.172 1.172 20 C -0.142 4.142 21 H 0.107 0.893 22 H 0.073 0.927 23 H 0.111 0.889 24 H 0.178 0.822 25 H 0.163 0.837 26 H 0.245 0.755 27 H 0.087 0.913 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.601 8.144 -4.662 9.403 hybrid contribution 0.511 -1.402 -0.009 1.492 sum -0.090 6.741 -4.671 8.202 Atomic orbital electron populations 1.20834 0.88765 1.03486 1.03585 1.19906 0.97710 0.91231 0.98087 1.21106 0.91192 0.98732 1.00498 1.15606 0.92515 0.85556 1.07811 1.25591 0.92322 0.92308 0.92229 1.81230 1.09547 1.11992 1.10727 1.20907 1.00485 0.89158 1.03945 1.17901 0.91817 0.86398 0.97193 1.43726 1.25233 1.08781 1.56022 1.18662 0.84679 0.84304 0.78537 1.90603 1.28034 1.85061 1.45081 1.21404 1.12951 0.92187 1.33496 0.88943 1.26931 0.94509 1.04920 0.92117 1.70130 1.18284 1.32731 1.22765 0.85011 0.78245 0.74890 0.80189 1.18766 1.19844 1.17203 1.21369 0.93459 0.98817 1.00542 0.89344 0.92722 0.88918 0.82243 0.83652 0.75486 0.91251 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 10.00 71.24 0.71 -1.80 15 2 C -0.07 -2.00 5.87 -19.92 -0.12 -2.12 15 3 C -0.09 -2.31 9.40 22.58 0.21 -2.10 15 4 C -0.01 -0.29 5.73 -21.38 -0.12 -0.41 15 5 C 0.29 7.82 15.33 88.33 1.35 9.17 15 6 N -0.46 -13.81 18.54 19.01 0.35 -13.45 15 7 C -0.12 -3.65 9.67 22.70 0.22 -3.43 15 8 C 0.16 6.22 6.27 38.25 0.24 6.46 15 9 N -0.69 -29.15 5.32 -307.65 -1.64 -30.79 15 10 C 0.53 28.58 7.47 86.30 0.64 29.22 15 11 O -0.60 -37.02 12.70 -4.47 -0.06 -37.08 15 12 C -0.56 -29.75 9.54 24.79 0.24 -29.51 15 13 H 0.09 4.31 7.85 -2.91 -0.02 4.29 15 14 C 0.03 1.67 5.50 85.33 0.47 2.14 15 15 N -0.81 -46.57 11.82 21.85 0.26 -46.31 15 16 Si 1.00 38.40 29.56 68.60 2.03 40.43 15 17 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 18 H -0.27 -10.24 7.11 99.48 0.71 -9.54 15 19 H -0.25 -8.90 7.11 99.48 0.71 -8.19 15 20 C -0.12 -4.63 8.29 22.47 0.19 -4.45 15 21 H 0.09 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.05 1.45 8.08 -2.39 -0.02 1.43 15 23 H 0.09 1.60 8.08 -2.39 -0.02 1.58 15 24 H 0.16 2.82 8.06 -2.91 -0.02 2.79 15 25 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 26 H 0.41 14.30 8.79 -92.71 -0.82 13.49 15 27 H 0.28 14.45 8.29 -92.70 -0.77 13.68 15 28 H 0.11 4.95 6.42 -2.91 -0.02 4.93 15 Total: -1.00 -68.58 264.10 5.37 -63.21 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.39 Total: 20.82 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 4.04 Total: 3.18 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.03 Total: -90.55 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.06 Total: -37.08 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -68.58 5.37 -63.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308208310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.855 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds