Wall clock time and date at job start Sun Mar 29 2020 22:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.52998 * 109.46919 * 239.99413 * 2 1 3 5 5 C 1.50699 * 109.46700 * 175.00020 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.81397 * 109.46891 * 119.99575 * 2 1 3 14 14 C 1.81402 * 103.00082 * 294.99942 * 13 2 1 15 15 H 1.09003 * 110.75207 * 54.30034 * 14 13 2 16 16 C 1.55306 * 110.84616 * 290.82517 * 14 13 2 17 17 C 1.54946 * 100.94192 * 207.67581 * 16 14 13 18 18 O 1.43647 * 105.13351 * 36.44584 * 17 16 14 19 19 C 1.43588 * 110.01521 * 335.38815 * 18 17 16 20 20 H 1.09001 * 109.79520 * 121.37545 * 19 18 17 21 21 C 1.52994 * 110.04493 * 242.46860 * 19 18 17 22 22 H 1.09000 * 109.47165 * 300.00830 * 1 2 3 23 23 H 1.09008 * 109.47093 * 60.00399 * 1 2 3 24 24 H 1.08995 * 109.47581 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47139 * 55.00397 * 4 2 1 26 26 H 1.08997 * 109.47675 * 294.99997 * 4 2 1 27 27 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 28 28 H 1.08999 * 111.12413 * 325.59703 * 16 14 13 29 29 H 1.08999 * 111.11925 * 89.76211 * 16 14 13 30 30 H 1.08994 * 110.30994 * 155.36041 * 17 16 14 31 31 H 1.08998 * 110.31122 * 277.53643 * 17 16 14 32 32 H 1.09000 * 109.47413 * 178.04073 * 21 19 18 33 33 H 1.08994 * 109.47138 * 298.03732 * 21 19 18 34 34 H 1.09005 * 109.47277 * 58.04029 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3582 8 7 5.5411 -1.1005 -2.4133 9 14 3.3013 -2.1069 -3.6964 10 1 2.9406 -1.1611 -4.7830 11 1 2.0651 -2.6989 -3.1249 12 1 4.1596 -3.1873 -4.2453 13 16 2.1346 -0.8550 1.4812 14 6 1.5664 0.2155 2.8309 15 1 0.4916 0.3843 2.7636 16 6 2.3386 1.5630 2.8300 17 6 2.2665 1.9443 4.3301 18 8 2.3789 0.7000 5.0391 19 6 1.9437 -0.3831 4.2030 20 1 2.7523 -1.1041 4.0821 21 6 0.7243 -1.0675 4.8238 22 1 -0.3633 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6054 -0.2619 -2.1370 26 1 1.7516 -1.7716 -1.2055 27 1 6.0254 -1.5067 -3.1491 28 1 3.3710 1.4239 2.5092 29 1 1.8334 2.3048 2.2115 30 1 3.0924 2.6052 4.5926 31 1 1.3127 2.4221 4.5536 32 1 0.3808 -1.8652 4.1651 33 1 0.9971 -1.4879 5.7917 34 1 -0.0738 -0.3371 4.9567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308252326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:40 Heat of formation + Delta-G solvation = -65.285469 kcal Electronic energy + Delta-G solvation = -14382.072414 eV Core-core repulsion = 12019.561853 eV Total energy + Delta-G solvation = -2362.510561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30688 -34.72012 -32.38967 -32.00826 -31.37519 -28.10012 -26.03426 -23.16309 -21.79993 -21.43111 -20.13405 -17.07493 -16.73057 -16.22602 -15.33377 -14.51881 -14.31803 -14.15713 -13.70469 -13.19479 -12.80665 -12.69251 -12.34710 -12.25427 -11.98691 -11.88212 -11.43516 -11.33530 -10.98546 -10.89586 -10.78116 -10.21278 -9.93303 -9.70108 -9.49758 -9.28878 -9.06290 -8.53519 -6.98442 -6.02866 -4.00772 2.16842 3.18077 3.29062 3.37518 3.39883 3.89015 4.44373 4.49550 4.75986 5.07207 5.18252 5.22265 5.30595 5.35931 5.46981 5.56694 5.60418 5.62723 5.73988 5.82600 5.87535 6.06571 6.15014 6.19462 6.25281 6.38890 6.49737 6.99320 7.01679 7.19888 7.71987 8.52712 9.04648 9.57950 11.10047 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039204 B = 0.006816 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.033931 B = 4106.777672 C = 4318.093441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 H 0.080 0.920 4 C 0.003 3.997 5 C -0.515 4.515 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.287 1.287 13 S -0.201 6.201 14 C -0.111 4.111 15 H 0.091 0.909 16 C -0.149 4.149 17 C 0.054 3.946 18 O -0.379 6.379 19 C 0.101 3.899 20 H 0.090 0.910 21 C -0.158 4.158 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.025 0.975 27 H 0.263 0.737 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 3.741 10.584 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 H 0.098 0.902 4 C -0.035 4.035 5 C -0.554 4.554 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.538 5.538 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.191 1.191 12 H -0.213 1.213 13 S 0.029 5.971 14 C -0.240 4.240 15 H 0.109 0.891 16 C -0.188 4.188 17 C -0.024 4.024 18 O -0.299 6.299 19 C 0.043 3.957 20 H 0.108 0.892 21 C -0.216 4.216 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.755 2.685 10.737 14.753 hybrid contribution -1.175 0.730 -1.214 1.840 sum -10.930 3.415 9.523 14.893 Atomic orbital electron populations 1.22154 0.95342 1.02283 1.00879 1.23157 0.95749 1.01803 0.96020 0.90209 1.19486 0.98063 0.95612 0.90364 1.21120 0.89177 1.35376 1.09696 0.90045 1.24980 0.94703 0.95797 0.97744 1.69905 1.06464 1.45313 1.32155 0.86883 0.80380 0.80137 0.82547 1.20348 1.19059 1.21281 1.87208 1.75318 1.35803 0.98778 1.24824 1.02491 0.98527 0.98126 0.89074 1.23644 1.02630 0.95806 0.96743 1.23326 1.01089 0.87017 0.90923 1.88466 1.86823 1.15147 1.39492 1.22510 0.97085 0.89422 0.86669 0.89204 1.22119 0.97171 1.00779 1.01530 0.93771 0.92170 0.91906 0.95573 0.95710 0.92762 0.88602 0.90048 0.89624 0.92614 0.90891 0.91844 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.10 37.16 0.34 -1.92 16 2 C -0.04 -0.74 2.72 -26.73 -0.07 -0.81 16 3 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.00 0.07 3.51 -27.88 -0.10 -0.03 16 5 C -0.52 -14.40 9.09 -34.44 -0.31 -14.72 16 6 H 0.08 2.47 7.84 -52.49 -0.41 2.06 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 9 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 S -0.20 -3.79 19.73 -107.50 -2.12 -5.91 16 14 C -0.11 -1.62 2.78 -24.78 -0.07 -1.69 16 15 H 0.09 1.23 6.69 -51.93 -0.35 0.88 16 16 C -0.15 -2.04 6.58 -24.48 -0.16 -2.21 16 17 C 0.05 0.66 7.78 38.18 0.30 0.96 16 18 O -0.38 -5.56 11.04 -35.23 -0.39 -5.95 16 19 C 0.10 1.44 3.80 -26.01 -0.10 1.34 16 20 H 0.09 1.39 7.77 -51.93 -0.40 0.99 16 21 C -0.16 -1.86 9.45 37.15 0.35 -1.51 16 22 H 0.04 0.59 6.82 -51.93 -0.35 0.23 16 23 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.10 1.50 8.03 -51.93 -0.42 1.08 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 286.73 15.07 4.32 4.32 Total: -1.00 -30.34 286.73 -7.68 -38.02 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -5.67 Total: -1.75 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.68 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.77 Total: -26.90 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.39 Total: -5.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -2.12 Total: -5.91 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.34 -7.68 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.266 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds