Wall clock time and date at job start Sun Mar 29 2020 22:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.52998 * 109.46919 * 239.99413 * 2 1 3 5 5 C 1.50699 * 109.46700 * 175.00020 * 4 2 1 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 2 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.81397 * 109.46891 * 119.99575 * 2 1 3 14 14 C 1.81402 * 103.00082 * 294.99942 * 13 2 1 15 15 H 1.09003 * 110.75207 * 54.30034 * 14 13 2 16 16 C 1.55306 * 110.84616 * 290.82517 * 14 13 2 17 17 C 1.54946 * 100.94192 * 207.67581 * 16 14 13 18 18 O 1.43647 * 105.13351 * 36.44584 * 17 16 14 19 19 C 1.43588 * 110.01521 * 335.38815 * 18 17 16 20 20 H 1.09001 * 109.79520 * 121.37545 * 19 18 17 21 21 C 1.52994 * 110.04493 * 242.46860 * 19 18 17 22 22 H 1.09000 * 109.47165 * 300.00830 * 1 2 3 23 23 H 1.09008 * 109.47093 * 60.00399 * 1 2 3 24 24 H 1.08995 * 109.47581 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47139 * 55.00397 * 4 2 1 26 26 H 1.08997 * 109.47675 * 294.99997 * 4 2 1 27 27 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 28 28 H 1.08999 * 111.12413 * 325.59703 * 16 14 13 29 29 H 1.08999 * 111.11925 * 89.76211 * 16 14 13 30 30 H 1.08994 * 110.30994 * 155.36041 * 17 16 14 31 31 H 1.08998 * 110.31122 * 277.53643 * 17 16 14 32 32 H 1.09000 * 109.47413 * 178.04073 * 21 19 18 33 33 H 1.08994 * 109.47138 * 298.03732 * 21 19 18 34 34 H 1.09005 * 109.47277 * 58.04029 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5418 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1928 -2.3582 8 7 5.5411 -1.1005 -2.4133 9 14 3.3013 -2.1069 -3.6964 10 1 2.9406 -1.1611 -4.7830 11 1 2.0651 -2.6989 -3.1249 12 1 4.1596 -3.1873 -4.2453 13 16 2.1346 -0.8550 1.4812 14 6 1.5664 0.2155 2.8309 15 1 0.4916 0.3843 2.7636 16 6 2.3386 1.5630 2.8300 17 6 2.2665 1.9443 4.3301 18 8 2.3789 0.7000 5.0391 19 6 1.9437 -0.3831 4.2030 20 1 2.7523 -1.1041 4.0821 21 6 0.7243 -1.0675 4.8238 22 1 -0.3633 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.6054 -0.2619 -2.1370 26 1 1.7516 -1.7716 -1.2055 27 1 6.0254 -1.5067 -3.1491 28 1 3.3710 1.4239 2.5092 29 1 1.8334 2.3048 2.2115 30 1 3.0924 2.6052 4.5926 31 1 1.3127 2.4221 4.5536 32 1 0.3808 -1.8652 4.1651 33 1 0.9971 -1.4879 5.7917 34 1 -0.0738 -0.3371 4.9567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308252326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:40 Heat of formation + Delta-G solvation = -83.731889 kcal Electronic energy + Delta-G solvation = -14382.872311 eV Core-core repulsion = 12019.561853 eV Total energy + Delta-G solvation = -2363.310458 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40575 -36.44556 -34.18095 -33.37271 -32.42481 -29.89175 -27.05536 -24.95080 -22.91357 -22.75974 -21.62420 -18.89224 -18.23155 -17.45066 -16.70750 -16.40060 -15.60301 -15.31966 -14.92526 -14.77597 -14.26342 -14.09233 -13.91258 -13.59395 -13.32916 -12.95964 -12.87559 -12.62269 -12.48685 -12.21012 -11.96612 -11.80582 -11.75022 -11.42008 -11.37167 -10.76396 -10.57149 -10.46739 -8.49513 -8.23849 -6.27471 0.79081 1.34518 1.37790 1.48010 1.78415 2.36980 2.83125 3.10397 3.37417 3.67532 3.96196 4.04520 4.08399 4.20060 4.22740 4.34159 4.50113 4.60788 4.67382 4.77961 4.86549 4.88188 4.94614 5.02304 5.06743 5.12188 5.21676 5.24401 5.38797 5.63455 5.96245 6.31187 6.79641 7.34642 8.91659 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039204 B = 0.006816 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.033931 B = 4106.777672 C = 4318.093441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 H 0.072 0.928 4 C 0.005 3.995 5 C -0.516 4.516 6 H 0.040 0.960 7 C 0.004 3.996 8 N -0.951 5.951 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.248 1.248 12 H -0.288 1.288 13 S -0.268 6.268 14 C -0.088 4.088 15 H 0.114 0.886 16 C -0.150 4.150 17 C 0.056 3.944 18 O -0.395 6.395 19 C 0.099 3.901 20 H 0.066 0.934 21 C -0.151 4.151 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.021 0.979 27 H 0.264 0.736 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.510 4.206 10.844 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 H 0.090 0.910 4 C -0.034 4.034 5 C -0.554 4.554 6 H 0.058 0.942 7 C -0.193 4.193 8 N -0.593 5.593 9 Si 0.767 3.233 10 H -0.188 1.188 11 H -0.172 1.172 12 H -0.214 1.214 13 S -0.039 6.039 14 C -0.217 4.217 15 H 0.132 0.868 16 C -0.190 4.190 17 C -0.021 4.021 18 O -0.315 6.315 19 C 0.041 3.959 20 H 0.084 0.916 21 C -0.209 4.209 22 H 0.087 0.913 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.722 3.163 11.002 17.115 hybrid contribution -0.172 0.661 -1.176 1.360 sum -12.894 3.823 9.826 16.656 Atomic orbital electron populations 1.22075 0.91679 1.03079 1.02862 1.23016 0.98539 1.00345 0.93973 0.90981 1.19412 0.94780 0.96036 0.93123 1.21388 0.91830 1.34022 1.08195 0.94203 1.25949 0.95534 0.97067 1.00709 1.70073 1.08523 1.47209 1.33458 0.85755 0.79346 0.78808 0.79347 1.18840 1.17189 1.21407 1.87382 1.76936 1.38016 1.01538 1.24809 1.03480 0.97558 0.95897 0.86755 1.23610 1.01010 0.95886 0.98474 1.23490 1.03139 0.86376 0.89134 1.88451 1.87227 1.15981 1.39858 1.22508 0.97507 0.89195 0.86682 0.91578 1.22068 0.96213 1.00971 1.01645 0.91277 0.90669 0.91693 0.94326 0.96117 0.92741 0.91571 0.88387 0.88427 0.89870 0.90644 0.91194 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.10 71.98 0.66 -3.13 16 2 C -0.03 -1.12 2.72 30.59 0.08 -1.04 16 3 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.00 0.21 3.51 29.85 0.10 0.32 16 5 C -0.52 -29.55 9.09 25.60 0.23 -29.32 16 6 H 0.04 2.54 7.84 -2.91 -0.02 2.52 16 7 C 0.00 0.22 5.47 84.65 0.46 0.68 16 8 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 9 Si 0.94 44.34 27.47 68.60 1.88 46.22 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 S -0.27 -10.16 19.73 -56.49 -1.11 -11.28 16 14 C -0.09 -2.45 2.78 31.86 0.09 -2.36 16 15 H 0.11 2.67 6.69 -2.39 -0.02 2.65 16 16 C -0.15 -3.96 6.58 32.05 0.21 -3.74 16 17 C 0.06 1.23 7.78 72.65 0.56 1.80 16 18 O -0.39 -10.93 11.04 -148.98 -1.64 -12.57 16 19 C 0.10 2.71 3.80 31.06 0.12 2.83 16 20 H 0.07 2.10 7.77 -2.39 -0.02 2.08 16 21 C -0.15 -3.20 9.45 71.98 0.68 -2.52 16 22 H 0.07 1.55 6.82 -2.39 -0.02 1.54 16 23 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.68 7.57 -2.39 -0.02 1.66 16 26 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 27 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 29 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -67.43 286.73 3.62 -63.82 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.99 Total: 10.49 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.20 Total: -36.48 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.19 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.64 Total: -12.57 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.11 Total: -11.28 kcal Total: -67.43 3.62 -63.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308252326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.914 kcal (2) G-P(sol) polarization free energy of solvation -67.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds