Wall clock time and date at job start Sun Mar 29 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00225 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.52358 * 305.12750 * 13 12 11 15 15 C 1.53176 * 109.52134 * 185.00153 * 13 12 11 16 16 C 1.53184 * 109.03664 * 183.11817 * 15 13 12 17 17 C 1.53090 * 109.16237 * 56.97824 * 16 15 13 18 18 O 1.42908 * 109.41506 * 302.39299 * 17 16 15 19 19 C 1.42897 * 114.09779 * 61.16238 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.09007 * 109.54520 * 302.97625 * 15 13 12 28 28 H 1.08991 * 109.54782 * 63.15882 * 15 13 12 29 29 H 1.08998 * 109.52228 * 176.88998 * 16 15 13 30 30 H 1.09001 * 109.51684 * 297.07586 * 16 15 13 31 31 H 1.08992 * 109.48271 * 62.38081 * 17 16 15 32 32 H 1.09008 * 109.47667 * 182.40188 * 17 16 15 33 33 H 1.08994 * 109.48409 * 178.85901 * 19 18 17 34 34 H 1.09000 * 109.48335 * 58.82394 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0004 13 6 1.5805 -7.8247 0.0021 14 1 0.8895 -7.7659 0.8430 15 6 2.4329 -9.0911 0.1275 16 6 1.5192 -10.3181 0.0494 17 6 0.7315 -10.2754 -1.2627 18 8 -0.0148 -9.0585 -1.3293 19 6 0.7904 -7.8783 -1.3082 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 3.1583 -9.1245 -0.6855 28 1 2.9565 -9.0851 1.0834 29 1 2.1232 -11.2248 0.0823 30 1 0.8261 -10.3103 0.8907 31 1 1.4232 -10.3242 -2.1036 32 1 0.0483 -11.1238 -1.3043 33 1 0.1498 -6.9997 -1.3825 34 1 1.4829 -7.8956 -2.1498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308384866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:38 Heat of formation + Delta-G solvation = -80.378407 kcal Electronic energy + Delta-G solvation = -13734.122776 eV Core-core repulsion = 11370.957736 eV Total energy + Delta-G solvation = -2363.165040 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.35808 -34.47908 -33.86254 -32.06471 -31.37478 -27.51333 -25.30036 -23.85638 -23.31193 -20.71549 -20.09266 -16.87541 -16.36056 -16.29160 -15.72335 -15.03630 -14.62351 -14.46668 -14.23262 -14.18590 -13.06245 -12.84345 -12.48419 -12.10410 -11.86208 -11.60523 -11.42279 -11.07105 -10.89284 -10.88126 -10.72536 -10.45981 -9.94612 -9.79891 -9.54523 -9.30507 -9.10718 -8.37172 -7.51595 -6.02072 -4.04694 1.78908 2.78817 3.31939 3.38044 3.41951 3.75789 4.45172 4.47482 4.54162 4.63389 4.70785 5.01894 5.17640 5.33563 5.34345 5.45443 5.48642 5.53595 5.58104 5.62196 5.69163 5.83908 5.98398 6.11910 6.53639 6.70073 6.95333 7.00573 7.62711 7.74702 7.96723 8.38498 9.01722 9.59587 11.09284 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.068055 B = 0.004224 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.335424 B = 6626.992661 C = 6897.952967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.074 4.074 12 S -0.268 6.268 13 C -0.094 4.094 14 H 0.092 0.908 15 C -0.101 4.101 16 C -0.151 4.151 17 C 0.057 3.943 18 O -0.380 6.380 19 C 0.067 3.933 20 H 0.261 0.739 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -19.688 -1.110 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.222 4.222 12 S -0.039 6.039 13 C -0.223 4.223 14 H 0.111 0.889 15 C -0.139 4.139 16 C -0.191 4.191 17 C -0.020 4.020 18 O -0.299 6.299 19 C -0.012 4.012 20 H 0.070 0.930 21 H 0.036 0.964 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.133 -19.528 -1.108 19.809 hybrid contribution -0.621 0.940 0.109 1.131 sum 2.513 -18.588 -0.999 18.784 Atomic orbital electron populations 1.69963 1.06078 1.26685 1.50762 1.25021 0.94863 0.99306 0.95232 0.86568 0.79855 0.83311 0.78138 1.20620 1.21200 1.19818 1.21219 0.93119 0.90858 1.50749 0.92547 1.19107 0.93801 0.90848 0.97428 1.21471 0.99159 0.91168 1.01588 1.23666 0.98817 0.95242 1.04441 1.86866 1.18283 1.00849 1.97868 1.23773 0.99879 0.96514 1.02099 0.88929 1.21395 0.97310 0.91644 1.03566 1.22212 0.99257 0.98247 0.99342 1.22609 0.95656 0.87430 0.96274 1.87967 1.33760 1.13739 1.94411 1.23018 0.94667 0.88277 0.95213 0.92951 0.96403 0.96410 0.92363 0.92387 0.90455 0.90478 0.90925 0.90507 0.90416 0.90850 0.93042 0.88833 0.88460 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.98 5.16 -26.74 -0.14 -2.12 16 11 C -0.07 -1.28 5.65 37.15 0.21 -1.07 16 12 S -0.27 -4.11 21.16 -107.50 -2.27 -6.38 16 13 C -0.09 -1.16 2.85 -26.59 -0.08 -1.23 16 14 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 15 C -0.10 -1.02 5.32 -26.55 -0.14 -1.16 16 16 C -0.15 -1.25 6.14 -26.59 -0.16 -1.41 16 17 C 0.06 0.51 6.84 37.20 0.25 0.77 16 18 O -0.38 -4.67 10.77 -35.23 -0.38 -5.05 16 19 C 0.07 0.82 6.01 37.21 0.22 1.04 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 26 H 0.08 1.28 7.23 -51.92 -0.38 0.91 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 33 H 0.10 1.24 7.05 -51.93 -0.37 0.88 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 289.76 15.07 4.37 4.37 Total: -1.00 -30.08 289.76 -8.73 -38.81 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.78 Total: -4.04 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.38 Total: -18.22 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.20 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.38 Total: -5.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -4.11 SS G_CDS: -2.27 Total: -6.38 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.08 -8.73 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308384866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.570 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds