Wall clock time and date at job start Sun Mar 29 2020 22:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 S 1.81400 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.81401 * 103.00225 * 179.97438 * 12 11 10 14 14 H 1.08994 * 109.52358 * 305.12750 * 13 12 11 15 15 C 1.53176 * 109.52134 * 185.00153 * 13 12 11 16 16 C 1.53184 * 109.03664 * 183.11817 * 15 13 12 17 17 C 1.53090 * 109.16237 * 56.97824 * 16 15 13 18 18 O 1.42908 * 109.41506 * 302.39299 * 17 16 15 19 19 C 1.42897 * 114.09779 * 61.16238 * 18 17 16 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 26 26 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 27 27 H 1.09007 * 109.54520 * 302.97625 * 15 13 12 28 28 H 1.08991 * 109.54782 * 63.15882 * 15 13 12 29 29 H 1.08998 * 109.52228 * 176.88998 * 16 15 13 30 30 H 1.09001 * 109.51684 * 297.07586 * 16 15 13 31 31 H 1.08992 * 109.48271 * 62.38081 * 17 16 15 32 32 H 1.09008 * 109.47667 * 182.40188 * 17 16 15 33 33 H 1.08994 * 109.48409 * 178.85901 * 19 18 17 34 34 H 1.09000 * 109.48335 * 58.82394 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0004 13 6 1.5805 -7.8247 0.0021 14 1 0.8895 -7.7659 0.8430 15 6 2.4329 -9.0911 0.1275 16 6 1.5192 -10.3181 0.0494 17 6 0.7315 -10.2754 -1.2627 18 8 -0.0148 -9.0585 -1.3293 19 6 0.7904 -7.8783 -1.3082 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 0.8537 -5.0445 0.8914 26 1 0.8532 -5.0451 -0.8886 27 1 3.1583 -9.1245 -0.6855 28 1 2.9565 -9.0851 1.0834 29 1 2.1232 -11.2248 0.0823 30 1 0.8261 -10.3103 0.8907 31 1 1.4232 -10.3242 -2.1036 32 1 0.0483 -11.1238 -1.3043 33 1 0.1498 -6.9997 -1.3825 34 1 1.4829 -7.8956 -2.1498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308384866.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:38 Heat of formation + Delta-G solvation = -97.353689 kcal Electronic energy + Delta-G solvation = -13734.858880 eV Core-core repulsion = 11370.957736 eV Total energy + Delta-G solvation = -2363.901144 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21052 -36.39103 -34.72046 -34.07816 -32.23155 -29.43268 -26.23368 -25.28268 -24.62474 -22.22092 -21.25199 -18.58797 -17.73130 -17.21533 -16.83091 -16.52844 -16.19883 -15.77009 -15.47126 -15.00665 -14.43515 -14.26266 -13.74839 -13.61158 -13.45663 -12.91872 -12.77866 -12.64367 -12.40229 -12.18405 -11.92194 -11.67626 -11.64498 -11.34879 -11.05670 -10.93231 -10.57399 -10.52023 -8.75321 -8.22049 -6.33385 0.59586 1.40263 1.41479 1.52369 1.53600 2.40561 2.93636 3.11428 3.59356 3.59842 3.90427 3.99062 4.00358 4.06978 4.16266 4.40213 4.52706 4.57717 4.67002 4.73544 4.78993 4.84241 4.94737 4.98039 5.06030 5.11318 5.24806 5.47279 5.65955 5.80655 6.13265 6.20828 6.82262 7.36012 8.89792 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.068055 B = 0.004224 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.335424 B = 6626.992661 C = 6897.952967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.030 3.970 10 C -0.080 4.080 11 C -0.071 4.071 12 S -0.273 6.273 13 C -0.084 4.084 14 H 0.088 0.912 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.048 3.952 18 O -0.398 6.398 19 C 0.069 3.931 20 H 0.265 0.735 21 H -0.004 1.004 22 H -0.003 1.003 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.085 0.915 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -20.853 -1.173 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.219 4.219 12 S -0.043 6.043 13 C -0.213 4.213 14 H 0.107 0.893 15 C -0.138 4.138 16 C -0.183 4.183 17 C -0.028 4.028 18 O -0.318 6.318 19 C -0.009 4.009 20 H 0.073 0.927 21 H 0.014 0.986 22 H 0.015 0.985 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.201 -20.701 -1.171 21.155 hybrid contribution -0.978 1.185 0.122 1.541 sum 3.223 -19.516 -1.050 19.808 Atomic orbital electron populations 1.70088 1.07771 1.27879 1.51493 1.25970 0.95787 1.03348 0.94575 0.85434 0.78653 0.78335 0.78565 1.19677 1.20610 1.18805 1.21663 0.93571 0.92293 1.50867 0.92238 1.18987 0.94188 0.92454 0.95260 1.21170 0.97992 0.91413 1.01337 1.23393 0.98939 0.94881 1.04681 1.86790 1.18304 1.01345 1.97903 1.23857 0.99588 0.95736 1.02110 0.89328 1.21445 0.97405 0.91090 1.03879 1.22193 0.99024 0.98227 0.98834 1.22896 0.96330 0.86573 0.97018 1.87949 1.34711 1.14578 1.94521 1.22911 0.94468 0.88384 0.95185 0.92671 0.98601 0.98496 0.92441 0.92631 0.90480 0.90124 0.90615 0.90187 0.87752 0.91037 0.92105 0.86893 0.89647 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.50 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.08 -3.40 5.16 30.59 0.16 -3.25 16 11 C -0.07 -2.47 5.65 71.98 0.41 -2.06 16 12 S -0.27 -8.12 21.16 -56.49 -1.20 -9.31 16 13 C -0.08 -1.96 2.85 30.69 0.09 -1.88 16 14 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 15 C -0.10 -1.78 5.32 30.71 0.16 -1.62 16 16 C -0.14 -1.95 6.14 30.69 0.19 -1.77 16 17 C 0.05 0.73 6.84 72.01 0.49 1.23 16 18 O -0.40 -9.20 10.77 -148.98 -1.60 -10.80 16 19 C 0.07 1.63 6.01 72.01 0.43 2.07 16 20 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 22 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 23 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.08 2.72 7.23 -2.39 -0.02 2.70 16 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.09 2.18 7.05 -2.39 -0.02 2.16 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -64.28 289.76 3.33 -60.95 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.04 Total: 5.52 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 2.77 Total: -36.27 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.60 Total: -10.80 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.20 Total: -9.31 kcal Total: -64.28 3.33 -60.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308384866.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.403 kcal (2) G-P(sol) polarization free energy of solvation -64.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds