Wall clock time and date at job start Sun Mar 29 2020 21:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86792 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47466 * 300.00243 * 3 2 1 6 6 H 1.48503 * 109.47253 * 60.00084 * 3 2 1 7 7 C 1.38798 * 119.99446 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.20821 * 119.99879 * 359.97438 * 11 10 9 13 13 O 1.34222 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.53004 * 117.49912 * 243.74399 * 16 15 14 18 18 C 1.53005 * 117.49441 * 175.08604 * 16 15 14 19 19 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47033 * 59.99957 * 10 9 7 21 21 H 1.09006 * 109.46937 * 299.99672 * 10 9 7 22 22 H 1.08993 * 109.47475 * 60.00347 * 14 13 11 23 23 H 1.09000 * 109.47147 * 300.00141 * 14 13 11 24 24 H 1.09000 * 109.47050 * 299.99913 * 15 14 13 25 25 H 1.09001 * 109.46801 * 60.00026 * 15 14 13 26 26 H 1.08998 * 115.55258 * 29.41891 * 16 15 14 27 27 H 1.08995 * 117.49607 * 0.02562 * 17 16 15 28 28 H 1.08997 * 117.49720 * 145.02846 * 17 16 15 29 29 H 1.09001 * 117.49764 * 214.98321 * 18 16 15 30 30 H 1.08998 * 117.49796 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7953 -5.5016 -0.0011 13 8 2.8402 -6.3390 -0.0018 14 6 2.2605 -7.6703 -0.0018 15 6 3.3795 -8.7138 -0.0019 16 6 2.7685 -10.1165 -0.0013 17 6 3.0373 -11.0036 1.2160 18 6 3.7262 -11.3041 -0.1176 19 1 -0.4850 0.8401 0.0004 20 1 3.1242 -3.7315 0.8894 21 1 3.1242 -3.7315 -0.8906 22 1 1.6440 -7.7981 -0.8915 23 1 1.6447 -7.7984 0.8884 24 1 3.9956 -8.5858 -0.8920 25 1 3.9957 -8.5858 0.8880 26 1 1.7953 -10.2057 -0.4839 27 1 3.6490 -10.5877 2.0165 28 1 2.2411 -11.6766 1.5339 29 1 3.3828 -12.1747 -0.6764 30 1 4.7914 -11.0861 -0.1941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308411185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:06 Heat of formation + Delta-G solvation = -77.129815 kcal Electronic energy + Delta-G solvation = -13106.313424 eV Core-core repulsion = 10607.456159 eV Total energy + Delta-G solvation = -2498.857265 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99270 -37.90862 -36.06821 -32.48296 -31.48414 -29.39837 -25.57090 -23.91875 -22.64941 -21.03540 -20.52151 -17.89956 -17.09890 -16.50128 -16.06162 -15.32903 -14.84579 -14.56060 -14.29856 -13.96699 -12.98646 -12.71535 -12.63011 -11.96518 -11.87533 -11.72304 -11.47618 -11.09404 -11.07040 -10.82187 -10.60550 -10.47101 -10.11329 -9.96293 -9.87850 -9.12115 -8.34706 -6.59830 -6.27179 -3.99649 2.65289 2.69237 3.19939 3.24194 3.29686 3.46659 3.56518 4.14948 4.42973 4.59330 4.63764 4.90160 5.04779 5.08795 5.15398 5.31365 5.35673 5.39239 5.48926 5.63528 5.75947 5.79457 5.81997 5.86635 6.03909 6.09492 6.73825 7.56003 8.20263 8.30927 9.18452 10.80428 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.092332 B = 0.003985 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.182079 B = 7024.275399 C = 7229.674600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.060 6.060 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.363 6.363 14 C 0.069 3.931 15 C -0.088 4.088 16 C -0.153 4.153 17 C -0.180 4.180 18 C -0.178 4.178 19 H 0.269 0.731 20 H 0.102 0.898 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.617 -17.258 0.332 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.166 5.834 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.281 6.281 14 C -0.006 4.006 15 C -0.125 4.125 16 C -0.171 4.171 17 C -0.217 4.217 18 C -0.214 4.214 19 H 0.079 0.921 20 H 0.121 0.879 21 H 0.121 0.879 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.968 -17.447 0.333 18.443 hybrid contribution 1.724 1.146 0.001 2.070 sum 7.692 -16.301 0.334 18.028 Atomic orbital electron populations 1.70026 1.05993 1.27513 1.46712 1.25011 0.95075 0.99141 0.94356 0.86059 0.79606 0.81565 0.77926 1.19498 1.20512 1.20519 1.22891 0.95067 0.91158 1.59225 0.90527 1.85418 1.04467 0.96605 1.96875 1.23295 1.06909 0.90990 1.06451 1.23284 0.85187 0.87122 0.72384 1.90662 1.16971 1.85701 1.44128 1.86480 1.41390 1.15460 1.84808 1.22946 0.96023 0.78923 1.02688 1.21111 0.97269 0.90513 1.03644 1.22160 1.00684 0.91044 1.03236 1.23092 1.03524 1.03361 0.91750 1.22983 0.98570 0.99233 1.00663 0.92132 0.87933 0.87931 0.91276 0.91214 0.90387 0.90660 0.87408 0.88573 0.88756 0.88713 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.08 2.05 7.80 -52.48 -0.41 1.64 16 9 S -0.06 -1.62 20.58 -107.50 -2.21 -3.83 16 10 C -0.13 -2.66 6.27 36.01 0.23 -2.44 16 11 C 0.48 9.42 7.97 36.01 0.29 9.70 16 12 O -0.49 -10.98 15.61 -18.75 -0.29 -11.27 16 13 O -0.36 -5.93 10.22 -39.24 -0.40 -6.33 16 14 C 0.07 0.90 5.42 37.16 0.20 1.10 16 15 C -0.09 -0.88 5.88 -26.73 -0.16 -1.04 16 16 C -0.15 -1.31 5.73 -90.62 -0.52 -1.83 16 17 C -0.18 -1.39 10.18 -26.69 -0.27 -1.66 16 18 C -0.18 -1.30 10.25 -26.69 -0.27 -1.57 16 19 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 21 H 0.10 1.96 8.14 -51.91 -0.42 1.54 16 22 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 23 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 26 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -31.86 282.42 -7.42 -39.28 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.17 Total: -2.61 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.31 Total: -10.57 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.73 Total: -25.13 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.69 Total: -17.60 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.86 -7.42 -39.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308411185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.846 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds