Wall clock time and date at job start Sun Mar 29 2020 21:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86792 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47485 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47466 * 300.00243 * 3 2 1 6 6 H 1.48503 * 109.47253 * 60.00084 * 3 2 1 7 7 C 1.38798 * 119.99446 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.81006 * 100.00146 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47183 * 180.02562 * 10 9 7 12 12 O 1.20821 * 119.99879 * 359.97438 * 11 10 9 13 13 O 1.34222 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.53004 * 117.49912 * 243.74399 * 16 15 14 18 18 C 1.53005 * 117.49441 * 175.08604 * 16 15 14 19 19 H 0.97003 * 119.99593 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47033 * 59.99957 * 10 9 7 21 21 H 1.09006 * 109.46937 * 299.99672 * 10 9 7 22 22 H 1.08993 * 109.47475 * 60.00347 * 14 13 11 23 23 H 1.09000 * 109.47147 * 300.00141 * 14 13 11 24 24 H 1.09000 * 109.47050 * 299.99913 * 15 14 13 25 25 H 1.09001 * 109.46801 * 60.00026 * 15 14 13 26 26 H 1.08998 * 115.55258 * 29.41891 * 16 15 14 27 27 H 1.08995 * 117.49607 * 0.02562 * 17 16 15 28 28 H 1.08997 * 117.49720 * 145.02846 * 17 16 15 29 29 H 1.09001 * 117.49764 * 214.98321 * 18 16 15 30 30 H 1.08998 * 117.49796 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7953 -5.5016 -0.0011 13 8 2.8402 -6.3390 -0.0018 14 6 2.2605 -7.6703 -0.0018 15 6 3.3795 -8.7138 -0.0019 16 6 2.7685 -10.1165 -0.0013 17 6 3.0373 -11.0036 1.2160 18 6 3.7262 -11.3041 -0.1176 19 1 -0.4850 0.8401 0.0004 20 1 3.1242 -3.7315 0.8894 21 1 3.1242 -3.7315 -0.8906 22 1 1.6440 -7.7981 -0.8915 23 1 1.6447 -7.7984 0.8884 24 1 3.9956 -8.5858 -0.8920 25 1 3.9957 -8.5858 0.8880 26 1 1.7953 -10.2057 -0.4839 27 1 3.6490 -10.5877 2.0165 28 1 2.2411 -11.6766 1.5339 29 1 3.3828 -12.1747 -0.6764 30 1 4.7914 -11.0861 -0.1941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308411185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:06 Heat of formation + Delta-G solvation = -95.219418 kcal Electronic energy + Delta-G solvation = -13107.097848 eV Core-core repulsion = 10607.456159 eV Total energy + Delta-G solvation = -2499.641689 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 230.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.48062 -38.67015 -37.45601 -34.61382 -32.57950 -30.90818 -27.72033 -24.95587 -23.22310 -22.39841 -21.35752 -19.87804 -18.64704 -17.82649 -17.31390 -16.89690 -16.35695 -16.05283 -15.58479 -15.03110 -14.61487 -14.25105 -13.98673 -13.21410 -13.13528 -12.92256 -12.90658 -12.62907 -12.36277 -12.30572 -11.76919 -11.67257 -11.63869 -11.17652 -11.17487 -10.81528 -10.37955 -8.74350 -8.37796 -6.17750 1.01995 1.11646 1.41569 1.42594 1.56850 1.88160 2.23737 2.88070 2.97427 3.25333 3.59367 3.87763 3.91889 4.02824 4.11094 4.18172 4.23237 4.34713 4.44051 4.60025 4.80794 4.87629 4.97115 5.05866 5.27048 5.28347 5.38116 5.41371 6.18286 6.68219 7.04052 8.71807 Molecular weight = 230.08amu Principal moments of inertia in cm(-1) A = 0.092332 B = 0.003985 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.182079 B = 7024.275399 C = 7229.674600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.002 2.998 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.087 0.913 9 S -0.140 6.140 10 C -0.108 4.108 11 C 0.487 3.513 12 O -0.523 6.523 13 O -0.353 6.353 14 C 0.063 3.937 15 C -0.078 4.078 16 C -0.167 4.167 17 C -0.182 4.182 18 C -0.168 4.168 19 H 0.273 0.727 20 H 0.122 0.878 21 H 0.123 0.877 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.632 -17.716 0.332 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.105 0.895 9 S 0.087 5.913 10 C -0.257 4.257 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.270 6.270 14 C -0.011 4.011 15 C -0.115 4.115 16 C -0.185 4.185 17 C -0.219 4.219 18 C -0.205 4.205 19 H 0.082 0.918 20 H 0.140 0.860 21 H 0.141 0.859 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.006 -17.936 0.333 19.645 hybrid contribution 1.124 1.125 0.004 1.591 sum 9.130 -16.811 0.337 19.134 Atomic orbital electron populations 1.70175 1.07960 1.28744 1.47777 1.26138 0.96001 1.03334 0.93524 0.84859 0.78608 0.76096 0.78104 1.18000 1.19878 1.19893 1.23234 0.95538 0.91515 1.59240 0.89539 1.85541 1.09419 0.99204 1.97174 1.23096 1.04197 0.90052 1.08340 1.23004 0.84779 0.87531 0.71681 1.90657 1.18403 1.86187 1.45865 1.86457 1.40501 1.16126 1.83962 1.23289 0.97477 0.77717 1.02620 1.21074 0.96160 0.90122 1.04165 1.22128 1.01196 0.90613 1.04553 1.23184 1.03831 1.03070 0.91825 1.23076 0.98645 0.98602 1.00181 0.91839 0.85953 0.85939 0.91316 0.91464 0.89825 0.90175 0.87481 0.88370 0.88106 0.87670 0.88005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16 2 C 0.02 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -30.82 9.50 67.95 0.65 -30.17 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.14 -7.67 20.58 -56.49 -1.16 -8.83 16 10 C -0.11 -4.38 6.27 71.24 0.45 -3.94 16 11 C 0.49 18.85 7.97 71.24 0.57 19.41 16 12 O -0.52 -23.67 15.61 21.98 0.34 -23.32 16 13 O -0.35 -11.01 10.22 -51.34 -0.52 -11.54 16 14 C 0.06 1.58 5.42 71.98 0.39 1.97 16 15 C -0.08 -1.41 5.88 30.60 0.18 -1.23 16 16 C -0.17 -2.57 5.73 -10.79 -0.06 -2.63 16 17 C -0.18 -2.45 10.18 30.62 0.31 -2.14 16 18 C -0.17 -2.07 10.25 30.62 0.31 -1.76 16 19 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 20 H 0.12 4.47 8.14 -2.40 -0.02 4.45 16 21 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 22 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 23 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.39 7.87 -2.39 -0.02 1.37 16 26 H 0.11 1.66 8.08 -2.39 -0.02 1.64 16 27 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.52 282.42 5.34 -63.17 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.11 Total: 9.41 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 3.26 Total: -19.18 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.73 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.18 Total: -34.86 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.16 Total: -8.83 kcal Total: -68.52 5.34 -63.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308411185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.046 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds